miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 113545 0.75 0.197068
Target:  5'- gGGGcCGUGCGCGCGCuGGacCGCGAGc -3'
miRNA:   3'- gCCC-GCGCGUGCGCGuCCacGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 34921 0.75 0.197068
Target:  5'- gGGGCGCGgcCACGCGgGGGgcggccgGCGCGAc -3'
miRNA:   3'- gCCCGCGC--GUGCGCgUCCa------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 58470 0.75 0.201847
Target:  5'- cCGGGCGCGUAUGagcCGCAGGccgGCGCGcGg -3'
miRNA:   3'- -GCCCGCGCGUGC---GCGUCCa--CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 29210 0.74 0.207221
Target:  5'- gCGGGCGCGCGacuggggccCGCGCAGGcuacgccgcggcgccGCGCGAc -3'
miRNA:   3'- -GCCCGCGCGU---------GCGCGUCCa--------------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 138193 0.74 0.21171
Target:  5'- aGGGCGCGgGCGgGCGGGggGCAgGGc -3'
miRNA:   3'- gCCCGCGCgUGCgCGUCCa-CGUgCUc -5'
23740 3' -62.2 NC_005261.1 + 137753 0.74 0.21171
Target:  5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 59085 0.74 0.21171
Target:  5'- gCGGGUGCGcCGCGCccucgcgcucGCAGGcgcGCGCGAGc -3'
miRNA:   3'- -GCCCGCGC-GUGCG----------CGUCCa--CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 56120 0.74 0.21171
Target:  5'- gCGGGaGCGCGC-CGCAGGgcgggggGCGCGGGc -3'
miRNA:   3'- -GCCCgCGCGUGcGCGUCCa------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 522 0.74 0.21171
Target:  5'- aGGGCGCGgGCGgGCGGGggGCAgGGc -3'
miRNA:   3'- gCCCGCGCgUGCgCGUCCa-CGUgCUc -5'
23740 3' -62.2 NC_005261.1 + 70 0.74 0.21171
Target:  5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 118684 0.74 0.215258
Target:  5'- gCGGGCgcugGCGCACGCGCGGcGUGguccugcucagcguCGCGGGc -3'
miRNA:   3'- -GCCCG----CGCGUGCGCGUC-CAC--------------GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 107258 0.74 0.216794
Target:  5'- gCGGGCGCGCgggcACGgGCGGGcGCGCa-- -3'
miRNA:   3'- -GCCCGCGCG----UGCgCGUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 108177 0.74 0.216794
Target:  5'- aGGGCGCGCGgcCGCgGCuccGG-GCGCGAGa -3'
miRNA:   3'- gCCCGCGCGU--GCG-CGu--CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 95671 0.74 0.216794
Target:  5'- aCGGGCGCgggugugaGCACGUGCAcGaGCGCGAGu -3'
miRNA:   3'- -GCCCGCG--------CGUGCGCGUcCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 18979 0.74 0.22146
Target:  5'- gGGGCGCGCACGaaaGuCAaaggucaacaucuGGUGCAgGAGg -3'
miRNA:   3'- gCCCGCGCGUGCg--C-GU-------------CCACGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 22085 0.74 0.221984
Target:  5'- aGGGgGCGC-CGCGUGGGgGCGgGAGg -3'
miRNA:   3'- gCCCgCGCGuGCGCGUCCaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 49470 0.74 0.221984
Target:  5'- gCGGGCGCGCAggcCGCGCGGaagcUGCAgcaGAGg -3'
miRNA:   3'- -GCCCGCGCGU---GCGCGUCc---ACGUg--CUC- -5'
23740 3' -62.2 NC_005261.1 + 53077 0.74 0.221984
Target:  5'- gGGGCgGCGCACGgacCGCAGGaagGCACGcAGc -3'
miRNA:   3'- gCCCG-CGCGUGC---GCGUCCa--CGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 116492 0.74 0.226744
Target:  5'- gCGGGCGCGCGguauaaagagcgcCGcCGCGGcG-GCGCGAGg -3'
miRNA:   3'- -GCCCGCGCGU-------------GC-GCGUC-CaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 49031 0.74 0.227278
Target:  5'- gGcGGCGgGCACGCGCAGGcagccGC-CGAGc -3'
miRNA:   3'- gC-CCGCgCGUGCGCGUCCa----CGuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.