miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 5' -56.3 NC_005261.1 + 80316 0.76 0.344315
Target:  5'- cUCACgGUAgACGCGCUCGaccgCGGCCCc -3'
miRNA:   3'- aAGUG-CAUgUGCGCGAGCa---GCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 134101 0.75 0.421979
Target:  5'- -gCGCGccgGCGCGCGCUCGccgccgacuuccgccUCGACCCc -3'
miRNA:   3'- aaGUGCa--UGUGCGCGAGC---------------AGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 37986 0.74 0.454391
Target:  5'- cUUCGCGUGgACGCGCUaCG-CGgcGCCCGa -3'
miRNA:   3'- -AAGUGCAUgUGCGCGA-GCaGC--UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 116399 0.74 0.459923
Target:  5'- -cCGCGUGCACGCGCacccgcuuauaggCGUCGGggccCCCGa -3'
miRNA:   3'- aaGUGCAUGUGCGCGa------------GCAGCU----GGGC- -5'
23740 5' -56.3 NC_005261.1 + 47960 0.74 0.482401
Target:  5'- gUUCACGcUGCGCGCGagcaCGUCGACCa- -3'
miRNA:   3'- -AAGUGC-AUGUGCGCga--GCAGCUGGgc -5'
23740 5' -56.3 NC_005261.1 + 10379 0.73 0.520986
Target:  5'- -gCGCGcUGCgccGCGCGCUCGUCGGCUUc -3'
miRNA:   3'- aaGUGC-AUG---UGCGCGAGCAGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 63786 0.73 0.530824
Target:  5'- -cCACGUGCGCGCGCggcugCGUgagcgUGaACCCGa -3'
miRNA:   3'- aaGUGCAUGUGCGCGa----GCA-----GC-UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 2140 0.73 0.540728
Target:  5'- cUCACGUccgGCGCGCcCGUCcagGACCCGg -3'
miRNA:   3'- aAGUGCAug-UGCGCGaGCAG---CUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 93583 0.72 0.580901
Target:  5'- -aCGCGauCGCGCGCUCGgCGACCUc -3'
miRNA:   3'- aaGUGCauGUGCGCGAGCaGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 50740 0.72 0.591052
Target:  5'- gUCGCc-GCACGCGCUCG-CG-CCCGc -3'
miRNA:   3'- aAGUGcaUGUGCGCGAGCaGCuGGGC- -5'
23740 5' -56.3 NC_005261.1 + 131614 0.71 0.601233
Target:  5'- -gCACGUACGCGCGCcUGgCG-CCCGc -3'
miRNA:   3'- aaGUGCAUGUGCGCGaGCaGCuGGGC- -5'
23740 5' -56.3 NC_005261.1 + 48043 0.71 0.611437
Target:  5'- -gCACGcGCGCGCGgUCGgggcccgCGGCCCa -3'
miRNA:   3'- aaGUGCaUGUGCGCgAGCa------GCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 108576 0.71 0.631883
Target:  5'- --gACGUGCGCGCGaaggCGUUGGCCUc -3'
miRNA:   3'- aagUGCAUGUGCGCga--GCAGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 53140 0.71 0.631883
Target:  5'- --gGCGUACGCGCGCgcCGUCGcGCCg- -3'
miRNA:   3'- aagUGCAUGUGCGCGa-GCAGC-UGGgc -5'
23740 5' -56.3 NC_005261.1 + 72303 0.71 0.64211
Target:  5'- --gACGUGggcCACGCGCUCGaugccccgCGGCCCa -3'
miRNA:   3'- aagUGCAU---GUGCGCGAGCa-------GCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 30336 0.71 0.64211
Target:  5'- -gCGCGgcugGCGgcCGCGCUCG-CGGCCCu -3'
miRNA:   3'- aaGUGCa---UGU--GCGCGAGCaGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 115816 0.71 0.656414
Target:  5'- cUCACGcACACGCGgUgcgccagcuugggcgCGUUGGCCCGc -3'
miRNA:   3'- aAGUGCaUGUGCGCgA---------------GCAGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 10031 0.7 0.672712
Target:  5'- cUCGCGUcGgGgGCGCUCGcucacCGGCCCGa -3'
miRNA:   3'- aAGUGCA-UgUgCGCGAGCa----GCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 46740 0.7 0.692962
Target:  5'- -gCGCGUGCACGUGC-CG-CaGCCCGc -3'
miRNA:   3'- aaGUGCAUGUGCGCGaGCaGcUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 86328 0.7 0.692962
Target:  5'- -cCACGUACuucaGCGCGUccaugUCGUUGcGCCCGg -3'
miRNA:   3'- aaGUGCAUG----UGCGCG-----AGCAGC-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.