miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 5' -56.3 NC_005261.1 + 1827 0.66 0.89335
Target:  5'- -gCGCGUaagcggccucgGCGCGCGCgaaggCGcCGgGCCCGa -3'
miRNA:   3'- aaGUGCA-----------UGUGCGCGa----GCaGC-UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 2140 0.73 0.540728
Target:  5'- cUCACGUccgGCGCGCcCGUCcagGACCCGg -3'
miRNA:   3'- aAGUGCAug-UGCGCGaGCAG---CUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 3952 0.67 0.841556
Target:  5'- -gCGCGUACGCGCGC-CG-CaGGCUCu -3'
miRNA:   3'- aaGUGCAUGUGCGCGaGCaG-CUGGGc -5'
23740 5' -56.3 NC_005261.1 + 10031 0.7 0.672712
Target:  5'- cUCGCGUcGgGgGCGCUCGcucacCGGCCCGa -3'
miRNA:   3'- aAGUGCA-UgUgCGCGAGCa----GCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 10379 0.73 0.520986
Target:  5'- -gCGCGcUGCgccGCGCGCUCGUCGGCUUc -3'
miRNA:   3'- aaGUGC-AUG---UGCGCGAGCAGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 11844 0.66 0.879624
Target:  5'- -cCGCGgGCGCGCGUUCG-CGAgCgCGa -3'
miRNA:   3'- aaGUGCaUGUGCGCGAGCaGCUgG-GC- -5'
23740 5' -56.3 NC_005261.1 + 11890 0.66 0.89335
Target:  5'- -cCGCccGCACGCGCgcccgccgCGggccCGGCCCGg -3'
miRNA:   3'- aaGUGcaUGUGCGCGa-------GCa---GCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 12315 0.66 0.865019
Target:  5'- -gCGCGUagccggcggGCGCGCGCUUGgcCGGCgCGg -3'
miRNA:   3'- aaGUGCA---------UGUGCGCGAGCa-GCUGgGC- -5'
23740 5' -56.3 NC_005261.1 + 17018 0.67 0.849576
Target:  5'- -gCACGcgGC-CGCGCUCGUCGcguagcgcACCuCGa -3'
miRNA:   3'- aaGUGCa-UGuGCGCGAGCAGC--------UGG-GC- -5'
23740 5' -56.3 NC_005261.1 + 21873 0.68 0.816385
Target:  5'- cUCGCGaACGCGCGCccgCGg-GGCCCc -3'
miRNA:   3'- aAGUGCaUGUGCGCGa--GCagCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 23342 0.69 0.742541
Target:  5'- -gCGCGgcgcaGCGCGCGCgUGUCGGCCg- -3'
miRNA:   3'- aaGUGCa----UGUGCGCGaGCAGCUGGgc -5'
23740 5' -56.3 NC_005261.1 + 28782 0.68 0.771206
Target:  5'- -cCGCGgcGCGgGCGCUCG-CGGCCgCGg -3'
miRNA:   3'- aaGUGCa-UGUgCGCGAGCaGCUGG-GC- -5'
23740 5' -56.3 NC_005261.1 + 29474 0.68 0.798756
Target:  5'- --aGCaGUACGCgGCGCUgGUgGACCUGg -3'
miRNA:   3'- aagUG-CAUGUG-CGCGAgCAgCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 30249 0.66 0.8866
Target:  5'- -gCGCgGUACucgACGCGCggcgCGgCGGCCCGc -3'
miRNA:   3'- aaGUG-CAUG---UGCGCGa---GCaGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 30336 0.71 0.64211
Target:  5'- -gCGCGgcugGCGgcCGCGCUCG-CGGCCCu -3'
miRNA:   3'- aaGUGCa---UGU--GCGCGAGCaGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 31394 0.67 0.833346
Target:  5'- --gACGUGCGCGUggugguGCUCuaCGACCCGc -3'
miRNA:   3'- aagUGCAUGUGCG------CGAGcaGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 32376 0.67 0.833346
Target:  5'- -gCugGUGCAgGCGCggcgCGgcggCGuCCCGg -3'
miRNA:   3'- aaGugCAUGUgCGCGa---GCa---GCuGGGC- -5'
23740 5' -56.3 NC_005261.1 + 37986 0.74 0.454391
Target:  5'- cUUCGCGUGgACGCGCUaCG-CGgcGCCCGa -3'
miRNA:   3'- -AAGUGCAUgUGCGCGA-GCaGC--UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 38283 0.66 0.8866
Target:  5'- -gCugGUGCACGCGg-UGcUGGCCCGc -3'
miRNA:   3'- aaGugCAUGUGCGCgaGCaGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 39165 0.69 0.722934
Target:  5'- -cCGCG-ACaACGCGCUCGggccCGACUCGc -3'
miRNA:   3'- aaGUGCaUG-UGCGCGAGCa---GCUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.