Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23753 | 5' | -57.9 | NC_005261.1 | + | 59575 | 0.66 | 0.78163 |
Target: 5'- cGCGCGCCgcagcGGGUgCCGCGCCg------ -3' miRNA: 3'- aCGCGUGG-----UCCA-GGUGCGGgaaguag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 101066 | 0.66 | 0.790832 |
Target: 5'- cGCGCAgccCCAGcaCCACGCCCg----- -3' miRNA: 3'- aCGCGU---GGUCcaGGUGCGGGaaguag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 19265 | 0.66 | 0.790832 |
Target: 5'- aGCGCGCgCGGGU--ACGCCag-CGUCu -3' miRNA: 3'- aCGCGUG-GUCCAggUGCGGgaaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 45631 | 0.66 | 0.78163 |
Target: 5'- gGCGCGgCGGGcCCGCGCCggagCAg- -3' miRNA: 3'- aCGCGUgGUCCaGGUGCGGgaa-GUag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 108369 | 0.66 | 0.789918 |
Target: 5'- gGCGCAucccugcCCGcGUCCGCGCCCgcgCGc- -3' miRNA: 3'- aCGCGU-------GGUcCAGGUGCGGGaa-GUag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 74764 | 0.66 | 0.790832 |
Target: 5'- aGCGCGCCacaggcgcggAGGUCgACGCgCg-CAUCc -3' miRNA: 3'- aCGCGUGG----------UCCAGgUGCGgGaaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 105950 | 0.66 | 0.78163 |
Target: 5'- aGCGCGCCGucgauGGccUCgGCGCCCagcgcggCGUCg -3' miRNA: 3'- aCGCGUGGU-----CC--AGgUGCGGGaa-----GUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 68972 | 0.66 | 0.78163 |
Target: 5'- gUGCGCGCCA---CCGCGgCCCUUU-UCg -3' miRNA: 3'- -ACGCGUGGUccaGGUGC-GGGAAGuAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 1367 | 0.66 | 0.772293 |
Target: 5'- cGCGgGCCcuGGUCCGCGUCCc----- -3' miRNA: 3'- aCGCgUGGu-CCAGGUGCGGGaaguag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 1167 | 0.66 | 0.772293 |
Target: 5'- cGCGCGCC-GGcCCGCGCCg------ -3' miRNA: 3'- aCGCGUGGuCCaGGUGCGGgaaguag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 69637 | 0.66 | 0.772293 |
Target: 5'- cGUGCGCUAccUgCGCGCCCU-CGUCa -3' miRNA: 3'- aCGCGUGGUccAgGUGCGGGAaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 77555 | 0.66 | 0.772293 |
Target: 5'- gGCGCcgccGCCAGuGgcgccgCCGCGCCCUggCAc- -3' miRNA: 3'- aCGCG----UGGUC-Ca-----GGUGCGGGAa-GUag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 128715 | 0.66 | 0.78163 |
Target: 5'- gGCGCGcCCGGGcCC-CGCCCg----- -3' miRNA: 3'- aCGCGU-GGUCCaGGuGCGGGaaguag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 104163 | 0.66 | 0.772293 |
Target: 5'- cGCGCcguCCGcGGgcgCCGCGCgCgggUCGUCg -3' miRNA: 3'- aCGCGu--GGU-CCa--GGUGCGgGa--AGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 65995 | 0.66 | 0.789003 |
Target: 5'- gGC-CACCAGGUCCgccuuuacgcGCGCCaccgccggcgCGUCg -3' miRNA: 3'- aCGcGUGGUCCAGG----------UGCGGgaa-------GUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 66137 | 0.66 | 0.772293 |
Target: 5'- aGCGCcgucACCAGGUUCA-GCCCcgagaUCAUg -3' miRNA: 3'- aCGCG----UGGUCCAGGUgCGGGa----AGUAg -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 1323 | 0.66 | 0.772293 |
Target: 5'- cGCGCuCCGGGacgccgccgcgCCGCGCCUgcaccagCGUCu -3' miRNA: 3'- aCGCGuGGUCCa----------GGUGCGGGaa-----GUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 58794 | 0.66 | 0.812313 |
Target: 5'- aGCGCGCgCAGGaaggccggcacgcgCCGCGCCa--CGUCc -3' miRNA: 3'- aCGCGUG-GUCCa-------------GGUGCGGgaaGUAG- -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 73739 | 0.66 | 0.790832 |
Target: 5'- uUGCGCGCgGGGguccggugCCACGgCCgCUUCu-- -3' miRNA: 3'- -ACGCGUGgUCCa-------GGUGC-GG-GAAGuag -5' |
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23753 | 5' | -57.9 | NC_005261.1 | + | 65576 | 0.66 | 0.772293 |
Target: 5'- gUGcCGCACCuGGUCCGCGagcuCCUgcUCGc- -3' miRNA: 3'- -AC-GCGUGGuCCAGGUGCg---GGA--AGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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