miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 5' -57.9 NC_005261.1 + 666 0.67 0.76283
Target:  5'- --gGCGCCGaGUCCugGCCCU-CcgCg -3'
miRNA:   3'- acgCGUGGUcCAGGugCGGGAaGuaG- -5'
23753 5' -57.9 NC_005261.1 + 1167 0.66 0.772293
Target:  5'- cGCGCGCC-GGcCCGCGCCg------ -3'
miRNA:   3'- aCGCGUGGuCCaGGUGCGGgaaguag -5'
23753 5' -57.9 NC_005261.1 + 1323 0.66 0.772293
Target:  5'- cGCGCuCCGGGacgccgccgcgCCGCGCCUgcaccagCGUCu -3'
miRNA:   3'- aCGCGuGGUCCa----------GGUGCGGGaa-----GUAG- -5'
23753 5' -57.9 NC_005261.1 + 1367 0.66 0.772293
Target:  5'- cGCGgGCCcuGGUCCGCGUCCc----- -3'
miRNA:   3'- aCGCgUGGu-CCAGGUGCGGGaaguag -5'
23753 5' -57.9 NC_005261.1 + 1663 0.68 0.683711
Target:  5'- cUGCGCgGCCAuGUCCuuGCGCCCgUCGa- -3'
miRNA:   3'- -ACGCG-UGGUcCAGG--UGCGGGaAGUag -5'
23753 5' -57.9 NC_005261.1 + 3450 0.67 0.723906
Target:  5'- gGCGCGCgGGccgCCGCGCCgcgCGUCg -3'
miRNA:   3'- aCGCGUGgUCca-GGUGCGGgaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 4161 0.71 0.492086
Target:  5'- gGCGCGCCagcugcAGGUCCGgGCCCgcgagCuUCg -3'
miRNA:   3'- aCGCGUGG------UCCAGGUgCGGGaa---GuAG- -5'
23753 5' -57.9 NC_005261.1 + 4226 0.67 0.723906
Target:  5'- cGCGCguacACCAGGUCCaccaGCGCCg--CGUa -3'
miRNA:   3'- aCGCG----UGGUCCAGG----UGCGGgaaGUAg -5'
23753 5' -57.9 NC_005261.1 + 4414 0.66 0.79989
Target:  5'- cGCGCuGCCGGG-CCAgGCCUcgccggagggCGUCa -3'
miRNA:   3'- aCGCG-UGGUCCaGGUgCGGGaa--------GUAG- -5'
23753 5' -57.9 NC_005261.1 + 4542 0.68 0.652057
Target:  5'- aGgGCGCCGGGcCCugGCCUUggcuggaUCcgCg -3'
miRNA:   3'- aCgCGUGGUCCaGGugCGGGA-------AGuaG- -5'
23753 5' -57.9 NC_005261.1 + 5834 0.66 0.808796
Target:  5'- aUGCGCGCCGGGUUacgGCGgCCg----- -3'
miRNA:   3'- -ACGCGUGGUCCAGg--UGCgGGaaguag -5'
23753 5' -57.9 NC_005261.1 + 10244 0.66 0.808796
Target:  5'- cGCGCACUcgccgccgcGGG-CCugGCgCCUUCu-- -3'
miRNA:   3'- aCGCGUGG---------UCCaGGugCG-GGAAGuag -5'
23753 5' -57.9 NC_005261.1 + 13256 0.71 0.501729
Target:  5'- gGCGCGCCgucaaagacuAGGUCCACGCUgUUguUg -3'
miRNA:   3'- aCGCGUGG----------UCCAGGUGCGGgAAguAg -5'
23753 5' -57.9 NC_005261.1 + 14539 0.7 0.561136
Target:  5'- gGCGCGgccgcCCGGcGaCCACGCCUUUCGUa -3'
miRNA:   3'- aCGCGU-----GGUC-CaGGUGCGGGAAGUAg -5'
23753 5' -57.9 NC_005261.1 + 15278 0.66 0.808796
Target:  5'- gGCGcCGCCGGGgcgcgcggUCGCGgCCUccgggUCGUCg -3'
miRNA:   3'- aCGC-GUGGUCCa-------GGUGCgGGA-----AGUAG- -5'
23753 5' -57.9 NC_005261.1 + 16716 0.67 0.743564
Target:  5'- cGCGCGCC-GGUaCugGCCCU-CGg- -3'
miRNA:   3'- aCGCGUGGuCCAgGugCGGGAaGUag -5'
23753 5' -57.9 NC_005261.1 + 19265 0.66 0.790832
Target:  5'- aGCGCGCgCGGGU--ACGCCag-CGUCu -3'
miRNA:   3'- aCGCGUG-GUCCAggUGCGGgaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 24559 0.68 0.673532
Target:  5'- gGCgGCGCCAGGUCC-CaGCCCg----- -3'
miRNA:   3'- aCG-CGUGGUCCAGGuG-CGGGaaguag -5'
23753 5' -57.9 NC_005261.1 + 29585 0.69 0.612044
Target:  5'- gGCGCgugcagggcuGCCGGGgCCACaGCUCgUUCAUCa -3'
miRNA:   3'- aCGCG----------UGGUCCaGGUG-CGGG-AAGUAG- -5'
23753 5' -57.9 NC_005261.1 + 30152 0.69 0.632563
Target:  5'- cGCGCGCCuuagcGGcgCCGCGCCCg----- -3'
miRNA:   3'- aCGCGUGGu----CCa-GGUGCGGGaaguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.