miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23753 5' -57.9 NC_005261.1 + 58794 0.66 0.812313
Target:  5'- aGCGCGCgCAGGaaggccggcacgcgCCGCGCCa--CGUCc -3'
miRNA:   3'- aCGCGUG-GUCCa-------------GGUGCGGgaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 50348 0.72 0.427217
Target:  5'- aGC-CGCCGGuaggCCGCGCCCgUCAUCa -3'
miRNA:   3'- aCGcGUGGUCca--GGUGCGGGaAGUAG- -5'
23753 5' -57.9 NC_005261.1 + 97421 0.72 0.445245
Target:  5'- gGCGCGCCGGG-CC-UGCCCUUgGg- -3'
miRNA:   3'- aCGCGUGGUCCaGGuGCGGGAAgUag -5'
23753 5' -57.9 NC_005261.1 + 102821 0.72 0.445245
Target:  5'- cGCGCGCC-GGUCUGCGCCUcgCGc- -3'
miRNA:   3'- aCGCGUGGuCCAGGUGCGGGaaGUag -5'
23753 5' -57.9 NC_005261.1 + 86714 0.72 0.463691
Target:  5'- aGCGCGuCCAGcuucgccgccucGUCCgccGCGCCCUgcaUCAUCg -3'
miRNA:   3'- aCGCGU-GGUC------------CAGG---UGCGGGA---AGUAG- -5'
23753 5' -57.9 NC_005261.1 + 70910 0.71 0.491127
Target:  5'- uUGCGCGCCAcGUCCcgcgcgagcuccaGCGCCUgcgCGUCc -3'
miRNA:   3'- -ACGCGUGGUcCAGG-------------UGCGGGaa-GUAG- -5'
23753 5' -57.9 NC_005261.1 + 4161 0.71 0.492086
Target:  5'- gGCGCGCCagcugcAGGUCCGgGCCCgcgagCuUCg -3'
miRNA:   3'- aCGCGUGG------UCCAGGUgCGGGaa---GuAG- -5'
23753 5' -57.9 NC_005261.1 + 106681 0.71 0.492086
Target:  5'- cGCGCGCCcgAGGgCCGCGCCgaUCGc- -3'
miRNA:   3'- aCGCGUGG--UCCaGGUGCGGgaAGUag -5'
23753 5' -57.9 NC_005261.1 + 13256 0.71 0.501729
Target:  5'- gGCGCGCCgucaaagacuAGGUCCACGCUgUUguUg -3'
miRNA:   3'- aCGCGUGG----------UCCAGGUGCGGgAAguAg -5'
23753 5' -57.9 NC_005261.1 + 103280 0.72 0.427217
Target:  5'- aGCGCGCCGGGUgCCGCGCgCa----- -3'
miRNA:   3'- aCGCGUGGUCCA-GGUGCGgGaaguag -5'
23753 5' -57.9 NC_005261.1 + 36875 0.73 0.418366
Target:  5'- -cCGCACgCuGGcCCGCGCCCUUCcUCg -3'
miRNA:   3'- acGCGUG-GuCCaGGUGCGGGAAGuAG- -5'
23753 5' -57.9 NC_005261.1 + 121916 0.73 0.409628
Target:  5'- cUGCGCGCCGuGcgccgCCACGCUCUUCAg- -3'
miRNA:   3'- -ACGCGUGGUcCa----GGUGCGGGAAGUag -5'
23753 5' -57.9 NC_005261.1 + 72697 0.8 0.143065
Target:  5'- gGCGCGCCAGGUCCgccagcgucGCGCCCgccgcccCGUCc -3'
miRNA:   3'- aCGCGUGGUCCAGG---------UGCGGGaa-----GUAG- -5'
23753 5' -57.9 NC_005261.1 + 106424 0.79 0.16684
Target:  5'- aGCGgGCCGcGGUCCACGCCCgcccaGUCg -3'
miRNA:   3'- aCGCgUGGU-CCAGGUGCGGGaag--UAG- -5'
23753 5' -57.9 NC_005261.1 + 65681 0.76 0.273071
Target:  5'- cGCcaGCACCGGGUCCACGUCCa----- -3'
miRNA:   3'- aCG--CGUGGUCCAGGUGCGGGaaguag -5'
23753 5' -57.9 NC_005261.1 + 59078 0.75 0.306965
Target:  5'- aGCGCGCgCGGGUgcgCCGCGCCCUcgCGcUCg -3'
miRNA:   3'- aCGCGUG-GUCCA---GGUGCGGGAa-GU-AG- -5'
23753 5' -57.9 NC_005261.1 + 64729 0.74 0.3288
Target:  5'- uUGUGCACCAGGUCgGC-CCCgaCGUUg -3'
miRNA:   3'- -ACGCGUGGUCCAGgUGcGGGaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 50559 0.74 0.343984
Target:  5'- cGCGgACCAcGGUCaCGCGCCUggCGUCc -3'
miRNA:   3'- aCGCgUGGU-CCAG-GUGCGGGaaGUAG- -5'
23753 5' -57.9 NC_005261.1 + 90901 0.74 0.351763
Target:  5'- gGCGCGgCAGGUCUcggcgGCGCUCUUCcgCc -3'
miRNA:   3'- aCGCGUgGUCCAGG-----UGCGGGAAGuaG- -5'
23753 5' -57.9 NC_005261.1 + 75710 0.73 0.384108
Target:  5'- cUGCGCGCCAcGGUCgACGCCa-UCAc- -3'
miRNA:   3'- -ACGCGUGGU-CCAGgUGCGGgaAGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.