miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23754 5' -63.3 NC_005261.1 + 55310 0.66 0.555141
Target:  5'- cGGuGCGGGgGGucagGGGGUGCUGUgGGGc -3'
miRNA:   3'- -CC-CGCCCgCCu---UCUCGCGGCGgCUCu -5'
23754 5' -63.3 NC_005261.1 + 29349 0.66 0.564712
Target:  5'- cGGCGGcGCGGGcgacacucgcgAGGGCcucugggacuGCC-CCGAGAu -3'
miRNA:   3'- cCCGCC-CGCCU-----------UCUCG----------CGGcGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 97015 0.66 0.564712
Target:  5'- uGGGCGGGCcGucGGGCG-CGCCcGGc -3'
miRNA:   3'- -CCCGCCCGcCuuCUCGCgGCGGcUCu -5'
23754 5' -63.3 NC_005261.1 + 73301 0.66 0.555141
Target:  5'- aGGCaGGCGGccaGGGGGUGCCGgucaaacaCGAGGg -3'
miRNA:   3'- cCCGcCCGCC---UUCUCGCGGCg-------GCUCU- -5'
23754 5' -63.3 NC_005261.1 + 102753 0.66 0.555141
Target:  5'- aGGGCGcuugccGCGGAcgcGAGCGCgC-CCGAGGc -3'
miRNA:   3'- -CCCGCc-----CGCCUu--CUCGCG-GcGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 30388 0.66 0.555141
Target:  5'- cGGcGCGGGUGGAgguGGAGgacaUGCgGgCCGGGGc -3'
miRNA:   3'- -CC-CGCCCGCCU---UCUC----GCGgC-GGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 62905 0.66 0.555141
Target:  5'- gGGGCgGGGCGGAcGcGCGCCcuaGCCc--- -3'
miRNA:   3'- -CCCG-CCCGCCUuCuCGCGG---CGGcucu -5'
23754 5' -63.3 NC_005261.1 + 132645 0.66 0.545618
Target:  5'- cGGGCGcGGCGGcccuAGCGgCCGCgugugggugCGAGGa -3'
miRNA:   3'- -CCCGC-CCGCCuuc-UCGC-GGCG---------GCUCU- -5'
23754 5' -63.3 NC_005261.1 + 15787 0.66 0.545618
Target:  5'- uGGCGGGCGccgcccgcgcGGccAGCGCCGCCa--- -3'
miRNA:   3'- cCCGCCCGC----------CUucUCGCGGCGGcucu -5'
23754 5' -63.3 NC_005261.1 + 120940 0.66 0.552278
Target:  5'- cGGGCGcgggaaGGUGGAggcucgcgccccgcGGGGCgcguGCCGCCGcAGGc -3'
miRNA:   3'- -CCCGC------CCGCCU--------------UCUCG----CGGCGGC-UCU- -5'
23754 5' -63.3 NC_005261.1 + 72470 0.66 0.558964
Target:  5'- cGGCGaGCGcGAgcgcggccagcgccaGGAGCGCCGCgCGAa- -3'
miRNA:   3'- cCCGCcCGC-CU---------------UCUCGCGGCG-GCUcu -5'
23754 5' -63.3 NC_005261.1 + 99088 0.66 0.542771
Target:  5'- aGGGCGGcGCGGcgcGcAGCGgCuugcucgcgaucagCGCCGAGAg -3'
miRNA:   3'- -CCCGCC-CGCCuu-C-UCGC-G--------------GCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 15028 0.66 0.555141
Target:  5'- cGGCGGGUGccgGGGGCGuaGCgGGGGg -3'
miRNA:   3'- cCCGCCCGCcu-UCUCGCggCGgCUCU- -5'
23754 5' -63.3 NC_005261.1 + 98492 0.66 0.563753
Target:  5'- cGGGCucGGGCGGGuaaGGUGCCggcguacgggcagGCgCGAGAu -3'
miRNA:   3'- -CCCG--CCCGCCUuc-UCGCGG-------------CG-GCUCU- -5'
23754 5' -63.3 NC_005261.1 + 134586 0.66 0.545618
Target:  5'- aGGGCGGGCcuGgcGAGCauaaagCGCCGGGu -3'
miRNA:   3'- -CCCGCCCGc-CuuCUCGcg----GCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 57191 0.66 0.545618
Target:  5'- cGGCGGGaaggGGggGGGgGgCGCgCGGGu -3'
miRNA:   3'- cCCGCCCg---CCuuCUCgCgGCG-GCUCu -5'
23754 5' -63.3 NC_005261.1 + 15256 0.66 0.554186
Target:  5'- -aGUGGGcCGcGAucgccccGGcGGCGCCGCCGGGGc -3'
miRNA:   3'- ccCGCCC-GC-CU-------UC-UCGCGGCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 75583 0.66 0.555141
Target:  5'- cGGCGGcGCGGcgcucGCGCgCGCCGcGGAc -3'
miRNA:   3'- cCCGCC-CGCCuucu-CGCG-GCGGC-UCU- -5'
23754 5' -63.3 NC_005261.1 + 22776 0.66 0.545618
Target:  5'- gGGGCGGGCcccgcgagaaGGggGuuGuCGCgGCCGGc- -3'
miRNA:   3'- -CCCGCCCG----------CCuuCu-C-GCGgCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 39793 0.66 0.603368
Target:  5'- cGGgGGGCGGc---GCgGCCGCCGGc- -3'
miRNA:   3'- cCCgCCCGCCuucuCG-CGGCGGCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.