miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23754 5' -63.3 NC_005261.1 + 82 0.7 0.356192
Target:  5'- gGGGCgGGGUGcGggGcGCGCCcCCGGGc -3'
miRNA:   3'- -CCCG-CCCGC-CuuCuCGCGGcGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 528 0.77 0.131115
Target:  5'- cGGGCGGGCGGGgggcAGGGCggacggcggcucgGCCGCCGc-- -3'
miRNA:   3'- -CCCGCCCGCCU----UCUCG-------------CGGCGGCucu -5'
23754 5' -63.3 NC_005261.1 + 1006 0.67 0.508103
Target:  5'- gGGGCGGGgGGcGGGGgGCgggugggcuuuUGCgGAGGg -3'
miRNA:   3'- -CCCGCCCgCCuUCUCgCG-----------GCGgCUCU- -5'
23754 5' -63.3 NC_005261.1 + 1045 0.73 0.244709
Target:  5'- cGGCGGGCGGcGGcguuAGCGgCGCgGGGGg -3'
miRNA:   3'- cCCGCCCGCCuUC----UCGCgGCGgCUCU- -5'
23754 5' -63.3 NC_005261.1 + 1413 0.68 0.454033
Target:  5'- cGGCGgcGGCGGggGcGGCGCCcGCCu--- -3'
miRNA:   3'- cCCGC--CCGCCuuC-UCGCGG-CGGcucu -5'
23754 5' -63.3 NC_005261.1 + 1854 0.66 0.583977
Target:  5'- aGGcGcCGGGCccGAAGAcGCGCCG-CGAGGc -3'
miRNA:   3'- -CC-C-GCCCGc-CUUCU-CGCGGCgGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 2585 0.74 0.192343
Target:  5'- cGGGCGgcacgcGGCGGAAGccgccgucggcggcGGgGCCGCCGGGc -3'
miRNA:   3'- -CCCGC------CCGCCUUC--------------UCgCGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 2764 0.68 0.471723
Target:  5'- cGGCGGGCcucgaGGcccgcccccgAGGGGCuGCCGCCGGc- -3'
miRNA:   3'- cCCGCCCG-----CC----------UUCUCG-CGGCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 3413 0.71 0.306361
Target:  5'- cGGCGGGCuGAAGAGCGCgcggGCCa--- -3'
miRNA:   3'- cCCGCCCGcCUUCUCGCGg---CGGcucu -5'
23754 5' -63.3 NC_005261.1 + 3445 0.67 0.508103
Target:  5'- aGGCGGGCGcGcGGGccgccGCGCCGCgcguCGAGu -3'
miRNA:   3'- cCCGCCCGC-CuUCU-----CGCGGCG----GCUCu -5'
23754 5' -63.3 NC_005261.1 + 3556 0.69 0.395128
Target:  5'- cGGCGGGCGc---GGCGCCGCUaAGGc -3'
miRNA:   3'- cCCGCCCGCcuucUCGCGGCGGcUCU- -5'
23754 5' -63.3 NC_005261.1 + 3838 0.68 0.479797
Target:  5'- cGGGCGcuGGCGGcAGcggcgccGGCGCCGCgCGGc- -3'
miRNA:   3'- -CCCGC--CCGCCuUC-------UCGCGGCG-GCUcu -5'
23754 5' -63.3 NC_005261.1 + 3904 0.7 0.36376
Target:  5'- cGGcGCGGGCGccc--GCGCCGCCGGc- -3'
miRNA:   3'- -CC-CGCCCGCcuucuCGCGGCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 4401 0.75 0.171886
Target:  5'- cGGGC-GGCGGcGGcGCGCUGCCGGGc -3'
miRNA:   3'- -CCCGcCCGCCuUCuCGCGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 4574 0.7 0.348736
Target:  5'- cGGGCGGGUccGGcGGGGCGCCccCCGGc- -3'
miRNA:   3'- -CCCGCCCG--CCuUCUCGCGGc-GGCUcu -5'
23754 5' -63.3 NC_005261.1 + 5559 0.7 0.333442
Target:  5'- gGGGCGcccgagcGGCGGAgaugGGGGCGCCGagggcgcccgccUCGAGGc -3'
miRNA:   3'- -CCCGC-------CCGCCU----UCUCGCGGC------------GGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 5730 0.7 0.348736
Target:  5'- aGGCcGGCGGGAGaAGCGCgCGCgGAa- -3'
miRNA:   3'- cCCGcCCGCCUUC-UCGCG-GCGgCUcu -5'
23754 5' -63.3 NC_005261.1 + 5819 0.66 0.603368
Target:  5'- cGGCaGcGGCGGccGAugcGCGCCggguuacggcgGCCGAGAg -3'
miRNA:   3'- cCCG-C-CCGCCuuCU---CGCGG-----------CGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 9107 0.68 0.480699
Target:  5'- -cGUGGuGUGccGAGAGgGCCGCCGGGAc -3'
miRNA:   3'- ccCGCC-CGCc-UUCUCgCGGCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 9137 0.66 0.574326
Target:  5'- gGGGCGGGUgcaggcaaaucGGGcugGGAccugGCGCCGCCcGGc -3'
miRNA:   3'- -CCCGCCCG-----------CCU---UCU----CGCGGCGGcUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.