miRNA display CGI


Results 1 - 20 of 259 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23754 5' -63.3 NC_005261.1 + 116484 0.84 0.044093
Target:  5'- cGGGCgGGGCGGGcgcgcgguauaaAGAGCGCCGCCGcGGc -3'
miRNA:   3'- -CCCG-CCCGCCU------------UCUCGCGGCGGCuCU- -5'
23754 5' -63.3 NC_005261.1 + 74284 0.83 0.051493
Target:  5'- cGGCGGGCGGGGcGGuCGCCGCCGGGc -3'
miRNA:   3'- cCCGCCCGCCUUcUC-GCGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 43779 0.82 0.055632
Target:  5'- gGGGCGGcGCGcGGAGGGCGCCGCgggUGAGGg -3'
miRNA:   3'- -CCCGCC-CGC-CUUCUCGCGGCG---GCUCU- -5'
23754 5' -63.3 NC_005261.1 + 68731 0.8 0.081442
Target:  5'- cGGCGGGCgccggcgGGAAGaAGCGcCCGCCGGGGc -3'
miRNA:   3'- cCCGCCCG-------CCUUC-UCGC-GGCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 103866 0.79 0.092664
Target:  5'- cGGCGgcGGCGGGGcGGCGCCGCCGGGc -3'
miRNA:   3'- cCCGC--CCGCCUUcUCGCGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 79711 0.79 0.092664
Target:  5'- cGGCGGGCGGcuguAGcAGaCGCCGCCGGGc -3'
miRNA:   3'- cCCGCCCGCCu---UC-UC-GCGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 16269 0.79 0.092664
Target:  5'- gGGGcCGGGCuucggcucgcccGGggGGGCGCCGUCGGGc -3'
miRNA:   3'- -CCC-GCCCG------------CCuuCUCGCGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 90232 0.78 0.099935
Target:  5'- cGGCGGGCGGGc--GCGCCGUCGGGu -3'
miRNA:   3'- cCCGCCCGCCUucuCGCGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 15966 0.78 0.105078
Target:  5'- uGGCGGGCGGggGAGgGCCcggGCCGc-- -3'
miRNA:   3'- cCCGCCCGCCuuCUCgCGG---CGGCucu -5'
23754 5' -63.3 NC_005261.1 + 98195 0.78 0.110469
Target:  5'- gGGGCGcGGCGGGcagcGGGCGCCGCCa--- -3'
miRNA:   3'- -CCCGC-CCGCCUu---CUCGCGGCGGcucu -5'
23754 5' -63.3 NC_005261.1 + 28790 0.78 0.116118
Target:  5'- cGGGCGcucgcggccgcGGCGGAGGcAGcCGCCGCCGAa- -3'
miRNA:   3'- -CCCGC-----------CCGCCUUC-UC-GCGGCGGCUcu -5'
23754 5' -63.3 NC_005261.1 + 24311 0.78 0.116118
Target:  5'- aGGGUGGGgGGggGGGCagGCCcaGCCGAGc -3'
miRNA:   3'- -CCCGCCCgCCuuCUCG--CGG--CGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 22662 0.77 0.119042
Target:  5'- cGGCgccuGGGCGGcgcccGAGUGCCGCCGGGGg -3'
miRNA:   3'- cCCG----CCCGCCuu---CUCGCGGCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 110296 0.77 0.119042
Target:  5'- uGGCGGGCGccu--GCGCCGCCGAGu -3'
miRNA:   3'- cCCGCCCGCcuucuCGCGGCGGCUCu -5'
23754 5' -63.3 NC_005261.1 + 33854 0.77 0.122036
Target:  5'- uGGGCGGGcCGGGAGGGCcccCCGCCGc-- -3'
miRNA:   3'- -CCCGCCC-GCCUUCUCGc--GGCGGCucu -5'
23754 5' -63.3 NC_005261.1 + 105274 0.77 0.128233
Target:  5'- cGGCGGGCGGc--AGCGCCGgCGAGc -3'
miRNA:   3'- cCCGCCCGCCuucUCGCGGCgGCUCu -5'
23754 5' -63.3 NC_005261.1 + 138199 0.77 0.131115
Target:  5'- cGGGCGGGCGGGgggcAGGGCggacggcggcucgGCCGCCGc-- -3'
miRNA:   3'- -CCCGCCCGCCU----UCUCG-------------CGGCGGCucu -5'
23754 5' -63.3 NC_005261.1 + 528 0.77 0.131115
Target:  5'- cGGGCGGGCGGGgggcAGGGCggacggcggcucgGCCGCCGc-- -3'
miRNA:   3'- -CCCGCCCGCCU----UCUCG-------------CGGCGGCucu -5'
23754 5' -63.3 NC_005261.1 + 105485 0.77 0.134719
Target:  5'- gGGGCGcGCGGGccccGAGC-CCGCCGAGAc -3'
miRNA:   3'- -CCCGCcCGCCUu---CUCGcGGCGGCUCU- -5'
23754 5' -63.3 NC_005261.1 + 74450 0.77 0.134719
Target:  5'- cGGCGGGgGGuGGGGGCGCCGCCc--- -3'
miRNA:   3'- cCCGCCCgCC-UUCUCGCGGCGGcucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.