miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23756 3' -56 NC_005261.1 + 89052 0.66 0.916057
Target:  5'- ----gCUGGACaACGAGGgcuucaccagCUUCGGCu -3'
miRNA:   3'- cucuaGACCUGcUGCUCCa---------GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 127374 0.66 0.910172
Target:  5'- aGGAUgucgUUGGcgGCGGCGAGGagCC-CGGCg -3'
miRNA:   3'- cUCUA----GACC--UGCUGCUCCa-GGaGCCG- -5'
23756 3' -56 NC_005261.1 + 74493 0.66 0.910172
Target:  5'- cGGGAUCUcggcgcucuucgGGGCGGCGccGGGgCCaUGGCg -3'
miRNA:   3'- -CUCUAGA------------CCUGCUGC--UCCaGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 129740 0.66 0.904054
Target:  5'- ------aGGGCGGCGGGG-CC-CGGCc -3'
miRNA:   3'- cucuagaCCUGCUGCUCCaGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 90202 0.66 0.904054
Target:  5'- gGAGcgCggGGGCGGCgGAGcGcCCUCGcGCg -3'
miRNA:   3'- -CUCuaGa-CCUGCUG-CUC-CaGGAGC-CG- -5'
23756 3' -56 NC_005261.1 + 112684 0.66 0.897703
Target:  5'- cGAGGggCUGGGCGuCGAGG-CCgugccCGuGCa -3'
miRNA:   3'- -CUCUa-GACCUGCuGCUCCaGGa----GC-CG- -5'
23756 3' -56 NC_005261.1 + 103514 0.66 0.891122
Target:  5'- ------cGGACGGCGGcGUCCgCGGCa -3'
miRNA:   3'- cucuagaCCUGCUGCUcCAGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 28117 0.66 0.884315
Target:  5'- aGAGGgggGGGCcucgaGGCGGGcGcCCUCGGCg -3'
miRNA:   3'- -CUCUagaCCUG-----CUGCUC-CaGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 84118 0.66 0.884315
Target:  5'- gGGGAgggGGGCagcgGGCGGGGUcgcuggcgggCCUCGGCc -3'
miRNA:   3'- -CUCUagaCCUG----CUGCUCCA----------GGAGCCG- -5'
23756 3' -56 NC_005261.1 + 118009 0.66 0.883623
Target:  5'- cGGcgCUGGACGcugucggacgcacGCGGGG-CC-CGGCc -3'
miRNA:   3'- cUCuaGACCUGC-------------UGCUCCaGGaGCCG- -5'
23756 3' -56 NC_005261.1 + 9637 0.67 0.877287
Target:  5'- uGGGggCUGgGugGGCGGGGcCCacUCGGg -3'
miRNA:   3'- -CUCuaGAC-CugCUGCUCCaGG--AGCCg -5'
23756 3' -56 NC_005261.1 + 12760 0.67 0.877287
Target:  5'- cGAGGUCguaGGCGGCGguggcgggGGGcUCgUCGGCg -3'
miRNA:   3'- -CUCUAGac-CUGCUGC--------UCC-AGgAGCCG- -5'
23756 3' -56 NC_005261.1 + 47708 0.67 0.877287
Target:  5'- --cGUCgGcGGCGuCGGGGgccUCCUCGGCg -3'
miRNA:   3'- cucUAGaC-CUGCuGCUCC---AGGAGCCG- -5'
23756 3' -56 NC_005261.1 + 60323 0.67 0.870041
Target:  5'- -cGAUCaGGugGACGAcGGUgUuugCGGCg -3'
miRNA:   3'- cuCUAGaCCugCUGCU-CCAgGa--GCCG- -5'
23756 3' -56 NC_005261.1 + 75572 0.67 0.870041
Target:  5'- gGGGcgCUGGGCGGCGGcgcGG-CgCUCGcGCg -3'
miRNA:   3'- -CUCuaGACCUGCUGCU---CCaG-GAGC-CG- -5'
23756 3' -56 NC_005261.1 + 15847 0.67 0.870041
Target:  5'- cGAGcgCgcuaGAgGACGAGGUCg-CGGCa -3'
miRNA:   3'- -CUCuaGac--CUgCUGCUCCAGgaGCCG- -5'
23756 3' -56 NC_005261.1 + 5575 0.67 0.862584
Target:  5'- gGAGAUggGGGCGcCGAGGgcgcccgCCUCgaGGCc -3'
miRNA:   3'- -CUCUAgaCCUGCuGCUCCa------GGAG--CCG- -5'
23756 3' -56 NC_005261.1 + 17544 0.67 0.85492
Target:  5'- ----aCUGGGCGGCGcGGGcCCgccguUCGGCg -3'
miRNA:   3'- cucuaGACCUGCUGC-UCCaGG-----AGCCG- -5'
23756 3' -56 NC_005261.1 + 104708 0.67 0.847055
Target:  5'- aGAGcggCUGGACGGcCGAGGgcgCgUCGuGCc -3'
miRNA:   3'- -CUCua-GACCUGCU-GCUCCa--GgAGC-CG- -5'
23756 3' -56 NC_005261.1 + 49171 0.67 0.847055
Target:  5'- ------cGGccACGGCGGGGUgCUCGGCc -3'
miRNA:   3'- cucuagaCC--UGCUGCUCCAgGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.