Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23756 | 3' | -56 | NC_005261.1 | + | 89052 | 0.66 | 0.916057 |
Target: 5'- ----gCUGGACaACGAGGgcuucaccagCUUCGGCu -3' miRNA: 3'- cucuaGACCUGcUGCUCCa---------GGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 19947 | 0.69 | 0.777794 |
Target: 5'- ----cCUGGGCGGgggUGGGGcggCCUCGGCu -3' miRNA: 3'- cucuaGACCUGCU---GCUCCa--GGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 60833 | 0.69 | 0.777794 |
Target: 5'- gGAGAUCaucgGcGGCGGCGAGGUCg-CGcGCc -3' miRNA: 3'- -CUCUAGa---C-CUGCUGCUCCAGgaGC-CG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 98975 | 0.68 | 0.796057 |
Target: 5'- cAGGUCccGGAgcACGucGUCCUCGGCa -3' miRNA: 3'- cUCUAGa-CCUgcUGCucCAGGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 39724 | 0.68 | 0.819767 |
Target: 5'- gGGGGUUUGGGgGGCG-GGUgccccagucgcggaUCUCGGCc -3' miRNA: 3'- -CUCUAGACCUgCUGCuCCA--------------GGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 106861 | 0.68 | 0.822328 |
Target: 5'- ----cCUGGGgGGCGGGcGUCCgCGGCc -3' miRNA: 3'- cucuaGACCUgCUGCUC-CAGGaGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 30473 | 0.68 | 0.822328 |
Target: 5'- cGGGGg--GGACGAgGAGGccggggCCUCGGa -3' miRNA: 3'- -CUCUagaCCUGCUgCUCCa-----GGAGCCg -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 5496 | 0.68 | 0.829918 |
Target: 5'- gGGGGguagCUGGggccgcggcagcgGCGGCGAGGccgccggCUUCGGCg -3' miRNA: 3'- -CUCUa---GACC-------------UGCUGCUCCa------GGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 63385 | 0.68 | 0.830752 |
Target: 5'- cGGGUCgcccuggccgUGGuCGAacaUGAGGUCgUCGGCg -3' miRNA: 3'- cUCUAG----------ACCuGCU---GCUCCAGgAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 19121 | 0.69 | 0.777794 |
Target: 5'- -cGGUCggugGGGCuaGGCGGGaacUCCUCGGCg -3' miRNA: 3'- cuCUAGa---CCUG--CUGCUCc--AGGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 52439 | 0.69 | 0.768464 |
Target: 5'- --cGUCcaGGGCcACGAGGUCCcCGGCg -3' miRNA: 3'- cucUAGa-CCUGcUGCUCCAGGaGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 24205 | 0.69 | 0.768464 |
Target: 5'- aGGAUCgu--CGGCGGGGUCCUgcaaaGGCa -3' miRNA: 3'- cUCUAGaccuGCUGCUCCAGGAg----CCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 83910 | 0.74 | 0.49945 |
Target: 5'- cGGGcUCgGGAcCGACGGGGUCCgagcgcgCGGCc -3' miRNA: 3'- -CUCuAGaCCU-GCUGCUCCAGGa------GCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 43848 | 0.72 | 0.588602 |
Target: 5'- cGAGggCgaGGACGcggccGCGucGUCCUCGGCg -3' miRNA: 3'- -CUCuaGa-CCUGC-----UGCucCAGGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 90883 | 0.72 | 0.619105 |
Target: 5'- -cGcgCUGGGCGACGgcauggcgcggcAGGUC-UCGGCg -3' miRNA: 3'- cuCuaGACCUGCUGC------------UCCAGgAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 57846 | 0.71 | 0.629302 |
Target: 5'- cGGGcgC-GGGCGGCaAGG-CCUCGGCg -3' miRNA: 3'- -CUCuaGaCCUGCUGcUCCaGGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 39245 | 0.71 | 0.649695 |
Target: 5'- cGAGGUCUccGGCGaggucuccaGCGAGGUCUUCGGg -3' miRNA: 3'- -CUCUAGAc-CUGC---------UGCUCCAGGAGCCg -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 88738 | 0.71 | 0.677125 |
Target: 5'- uGAGGgccagCUGGugGACGccauGGuggcggcgcugcgcUCCUCGGCc -3' miRNA: 3'- -CUCUa----GACCugCUGCu---CC--------------AGGAGCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 77768 | 0.7 | 0.719198 |
Target: 5'- cGGGG-CggcggGGACGACGAGG-CCUacuacccCGGCg -3' miRNA: 3'- -CUCUaGa----CCUGCUGCUCCaGGA-------GCCG- -5' |
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23756 | 3' | -56 | NC_005261.1 | + | 121454 | 0.69 | 0.759013 |
Target: 5'- uGGGGcCgucGAUGGCGAGcUCCUCGGCg -3' miRNA: 3'- -CUCUaGac-CUGCUGCUCcAGGAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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