miRNA display CGI


Results 1 - 20 of 872 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23757 3' -63.1 NC_005261.1 + 126943 0.66 0.613096
Target:  5'- cGGCCagggGCgCCGgGCGCggGgGCGGCaGCg -3'
miRNA:   3'- -CCGGg---CG-GGUgUGCGagUgCGCCG-CG- -5'
23757 3' -63.1 NC_005261.1 + 100209 0.66 0.613096
Target:  5'- cGGCCagcaGCCC-CGCguagaGCUCGgccacCGCcgGGCGCa -3'
miRNA:   3'- -CCGGg---CGGGuGUG-----CGAGU-----GCG--CCGCG- -5'
23757 3' -63.1 NC_005261.1 + 97740 0.66 0.613096
Target:  5'- cGGCUgGCaggggcgggGCGgGCUCG-GCGGCGCg -3'
miRNA:   3'- -CCGGgCGgg-------UGUgCGAGUgCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 31481 0.66 0.613096
Target:  5'- uGGCCgccggUGCgCgGCGgGCUCucgcaccugcuCGCGGCGCu -3'
miRNA:   3'- -CCGG-----GCG-GgUGUgCGAGu----------GCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 59002 0.66 0.613096
Target:  5'- cGGUgCGCCgG---GCUCGCccaGCGGCGCc -3'
miRNA:   3'- -CCGgGCGGgUgugCGAGUG---CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 106350 0.66 0.613096
Target:  5'- cGUCCGCCCcCGcCGC-CGCGCuGaCGCc -3'
miRNA:   3'- cCGGGCGGGuGU-GCGaGUGCGcC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 50459 0.66 0.613096
Target:  5'- cGCCgGCaggagaCCACgaggACGCUCGCguccGCGGCGg -3'
miRNA:   3'- cCGGgCG------GGUG----UGCGAGUG----CGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 88782 0.66 0.613096
Target:  5'- cGGCCCuGgCCGCcgGCGC-CGCGCagcaGGaCGCc -3'
miRNA:   3'- -CCGGG-CgGGUG--UGCGaGUGCG----CC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 39221 0.66 0.613096
Target:  5'- cGCCaugGCCCuCGCGCgCGC-CGGCGa -3'
miRNA:   3'- cCGGg--CGGGuGUGCGaGUGcGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 94041 0.66 0.613096
Target:  5'- cGGCCCG---GCGCGCcCccccaGCGGCGCc -3'
miRNA:   3'- -CCGGGCgggUGUGCGaGug---CGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 34701 0.66 0.613096
Target:  5'- gGGCCC-CUCGCAC-CUCgagccucaGCGguCGGCGCc -3'
miRNA:   3'- -CCGGGcGGGUGUGcGAG--------UGC--GCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 53559 0.66 0.613096
Target:  5'- cGCCgCgGCCCAgGCGCacuaGCGGcCGCg -3'
miRNA:   3'- cCGG-G-CGGGUgUGCGagugCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 75876 0.66 0.613096
Target:  5'- cGGCgCCGUggGCGCGCgCA-GCGGCGa -3'
miRNA:   3'- -CCG-GGCGggUGUGCGaGUgCGCCGCg -5'
23757 3' -63.1 NC_005261.1 + 124787 0.66 0.613096
Target:  5'- gGGCCCuuCCgACAgcCGCUCGuCGCGcucuagguGCGCg -3'
miRNA:   3'- -CCGGGc-GGgUGU--GCGAGU-GCGC--------CGCG- -5'
23757 3' -63.1 NC_005261.1 + 21232 0.66 0.611149
Target:  5'- gGGCCCGUCgGCugGCggcuuuucaggGCGUGcCGCa -3'
miRNA:   3'- -CCGGGCGGgUGugCGag---------UGCGCcGCG- -5'
23757 3' -63.1 NC_005261.1 + 70705 0.66 0.610176
Target:  5'- cGGCCCGCgCgggcacggccgagaGCACGUccagCACGU-GCGCc -3'
miRNA:   3'- -CCGGGCGgG--------------UGUGCGa---GUGCGcCGCG- -5'
23757 3' -63.1 NC_005261.1 + 117063 0.66 0.606285
Target:  5'- aGGCCaGCCUgguuaaGCACGagcucggcgaguaCUCgaucaugcucccgacGCGCGGCGCu -3'
miRNA:   3'- -CCGGgCGGG------UGUGC-------------GAG---------------UGCGCCGCG- -5'
23757 3' -63.1 NC_005261.1 + 93866 0.66 0.603368
Target:  5'- aGGCgCGCgCACuccuuccaGCUCagcaGCGCGGuCGCc -3'
miRNA:   3'- -CCGgGCGgGUGug------CGAG----UGCGCC-GCG- -5'
23757 3' -63.1 NC_005261.1 + 134099 0.66 0.603368
Target:  5'- cGGCgCGCCggCGCGCGCUCGC-CGcCGa -3'
miRNA:   3'- -CCGgGCGG--GUGUGCGAGUGcGCcGCg -5'
23757 3' -63.1 NC_005261.1 + 118773 0.66 0.603368
Target:  5'- cGCgCGCCgACGCuGCagacggCGCGCugauGGCGCa -3'
miRNA:   3'- cCGgGCGGgUGUG-CGa-----GUGCG----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.