miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 111936 0.7 0.792143
Target:  5'- uGCAgucg-GCGCUGAAGUACGaggagauguaccUGGCCa -3'
miRNA:   3'- -UGUaccugCGCGACUUCAUGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 79891 0.7 0.795833
Target:  5'- cACA-GGGCGCGCUccuuguuuugcagcaGGcaccAGgACGUGGCCa -3'
miRNA:   3'- -UGUaCCUGCGCGA---------------CU----UCaUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 61570 0.7 0.801322
Target:  5'- -gAUGGugGCGCU--GGUGa-UGGCCg -3'
miRNA:   3'- ugUACCugCGCGAcuUCAUgcACCGG- -5'
23758 3' -54 NC_005261.1 + 43453 0.7 0.801322
Target:  5'- cGCcUGGACGUcgccgggcggguGCUGGcggAGUGCGaGGCCu -3'
miRNA:   3'- -UGuACCUGCG------------CGACU---UCAUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 47073 0.7 0.801322
Target:  5'- cGCGUGGuACGCGUgcacgccGAAG-GCG-GGCCa -3'
miRNA:   3'- -UGUACC-UGCGCGa------CUUCaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 85942 0.7 0.801322
Target:  5'- gGCGgccaGGGCGcCGCgGAAGcugGCGUGGUCc -3'
miRNA:   3'- -UGUa---CCUGC-GCGaCUUCa--UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 115837 0.7 0.810341
Target:  5'- aGCuUGGGCGCGUUGGcccGCGcGGCCc -3'
miRNA:   3'- -UGuACCUGCGCGACUucaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 123164 0.7 0.819193
Target:  5'- gGCGgggcGGGCGCGCgGgcGUG-GUGGCUg -3'
miRNA:   3'- -UGUa---CCUGCGCGaCuuCAUgCACCGG- -5'
23758 3' -54 NC_005261.1 + 113549 0.69 0.827868
Target:  5'- cCGUGcGCGCGCUGGaccgcgagcaguGGUcgGUGGCCg -3'
miRNA:   3'- uGUACcUGCGCGACU------------UCAugCACCGG- -5'
23758 3' -54 NC_005261.1 + 37246 0.69 0.836358
Target:  5'- cGCGUGGACaGCGC-GGAG-ACcauccUGGCCg -3'
miRNA:   3'- -UGUACCUG-CGCGaCUUCaUGc----ACCGG- -5'
23758 3' -54 NC_005261.1 + 32912 0.69 0.836358
Target:  5'- ---gGGGCGCGCgUGggGgGCGgcgGGCg -3'
miRNA:   3'- uguaCCUGCGCG-ACuuCaUGCa--CCGg -5'
23758 3' -54 NC_005261.1 + 28836 0.69 0.836358
Target:  5'- ---cGGcCGCgGCUGAGGcggccguCGUGGCCg -3'
miRNA:   3'- uguaCCuGCG-CGACUUCau-----GCACCGG- -5'
23758 3' -54 NC_005261.1 + 118786 0.69 0.836358
Target:  5'- uGCAgacGGCGCGCUGAuGgcgcACGUGGgCg -3'
miRNA:   3'- -UGUac-CUGCGCGACUuCa---UGCACCgG- -5'
23758 3' -54 NC_005261.1 + 14963 0.69 0.844656
Target:  5'- ---cGGGCGUGcCUGggGcgacUGCGcGGCCg -3'
miRNA:   3'- uguaCCUGCGC-GACuuC----AUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 51002 0.69 0.844656
Target:  5'- cGCGUGGGCGCgGCgGGAGcucgGCGaGcGCCa -3'
miRNA:   3'- -UGUACCUGCG-CGaCUUCa---UGCaC-CGG- -5'
23758 3' -54 NC_005261.1 + 108570 0.69 0.844656
Target:  5'- uCGUGcGACGUGCgcgcGAAG-GCGuUGGCCu -3'
miRNA:   3'- uGUAC-CUGCGCGa---CUUCaUGC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 111607 0.69 0.852753
Target:  5'- -aGUGGGCGCgGCUGGGcUGCG-GcGCCg -3'
miRNA:   3'- ugUACCUGCG-CGACUUcAUGCaC-CGG- -5'
23758 3' -54 NC_005261.1 + 29684 0.69 0.852753
Target:  5'- -uGUGGGCGCuGCcgcacgUGgcGgccUGCGUGGCCa -3'
miRNA:   3'- ugUACCUGCG-CG------ACuuC---AUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 48123 0.69 0.860643
Target:  5'- gGCAUGGcGCGCGCgggaaagaggGggGaGgGUGGCg -3'
miRNA:   3'- -UGUACC-UGCGCGa---------CuuCaUgCACCGg -5'
23758 3' -54 NC_005261.1 + 75501 0.68 0.883004
Target:  5'- aGCGcGGG-GCGCUGGAGgcgcacgcCGUGGUCg -3'
miRNA:   3'- -UGUaCCUgCGCGACUUCau------GCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.