miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 3' -54 NC_005261.1 + 136607 0.71 0.734261
Target:  5'- aGCGUGGagcggcgcgcGCGCGCcGAGGgcgGCGggaaGGCCu -3'
miRNA:   3'- -UGUACC----------UGCGCGaCUUCa--UGCa---CCGG- -5'
23758 3' -54 NC_005261.1 + 135806 0.67 0.917954
Target:  5'- cCGUGGGCGaCGCgccguucgaGGAGUacaucccuggggcuuGCGUGGCg -3'
miRNA:   3'- uGUACCUGC-GCGa--------CUUCA---------------UGCACCGg -5'
23758 3' -54 NC_005261.1 + 135496 0.75 0.548718
Target:  5'- -gAUGGACGCGCUGGccucagccgacgAGUgccugACGUGGUg -3'
miRNA:   3'- ugUACCUGCGCGACU------------UCA-----UGCACCGg -5'
23758 3' -54 NC_005261.1 + 132940 0.74 0.579486
Target:  5'- uACGUGGuccccgaGCGCUGcgccgACGUGGCCg -3'
miRNA:   3'- -UGUACCug-----CGCGACuuca-UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 131213 0.71 0.754027
Target:  5'- ----cGGCGCGCccgcGUACGUGGCCg -3'
miRNA:   3'- uguacCUGCGCGacuuCAUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 127602 0.66 0.950946
Target:  5'- uUcgGGGcCGCGCUGAAcgcuaGCGgccGGCCg -3'
miRNA:   3'- uGuaCCU-GCGCGACUUca---UGCa--CCGG- -5'
23758 3' -54 NC_005261.1 + 127334 0.67 0.915608
Target:  5'- cGCggGGGCcggagcggcgggGCGCUGGGcccGCGUGGCUa -3'
miRNA:   3'- -UGuaCCUG------------CGCGACUUca-UGCACCGG- -5'
23758 3' -54 NC_005261.1 + 124188 0.72 0.683406
Target:  5'- cGCGUggggGGACGCGUccgguggcgUGAAcUGCGUGGCUg -3'
miRNA:   3'- -UGUA----CCUGCGCG---------ACUUcAUGCACCGG- -5'
23758 3' -54 NC_005261.1 + 123164 0.7 0.819193
Target:  5'- gGCGgggcGGGCGCGCgGgcGUG-GUGGCUg -3'
miRNA:   3'- -UGUa---CCUGCGCGaCuuCAUgCACCGG- -5'
23758 3' -54 NC_005261.1 + 121803 0.67 0.90329
Target:  5'- gGCAggGGGCGCgugGCUGGGcucUGCG-GGCCg -3'
miRNA:   3'- -UGUa-CCUGCG---CGACUUc--AUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 119570 0.77 0.440602
Target:  5'- -aGUGGAUGCGCUGcgagcgcGAGacCGUGGCCg -3'
miRNA:   3'- ugUACCUGCGCGAC-------UUCauGCACCGG- -5'
23758 3' -54 NC_005261.1 + 118893 0.67 0.932234
Target:  5'- ---cGGGCGCGCUG------GUGGCCu -3'
miRNA:   3'- uguaCCUGCGCGACuucaugCACCGG- -5'
23758 3' -54 NC_005261.1 + 118786 0.69 0.836358
Target:  5'- uGCAgacGGCGCGCUGAuGgcgcACGUGGgCg -3'
miRNA:   3'- -UGUac-CUGCGCGACUuCa---UGCACCgG- -5'
23758 3' -54 NC_005261.1 + 115837 0.7 0.810341
Target:  5'- aGCuUGGGCGCGUUGGcccGCGcGGCCc -3'
miRNA:   3'- -UGuACCUGCGCGACUucaUGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 114355 0.66 0.93728
Target:  5'- cGCGUGGcCGCGgccGAGUcgGUGGCCg -3'
miRNA:   3'- -UGUACCuGCGCgacUUCAugCACCGG- -5'
23758 3' -54 NC_005261.1 + 113549 0.69 0.827868
Target:  5'- cCGUGcGCGCGCUGGaccgcgagcaguGGUcgGUGGCCg -3'
miRNA:   3'- uGUACcUGCGCGACU------------UCAugCACCGG- -5'
23758 3' -54 NC_005261.1 + 112356 0.82 0.214911
Target:  5'- uCAUGGGCGCGCUGAAGcugcuggacuCGaUGGCCa -3'
miRNA:   3'- uGUACCUGCGCGACUUCau--------GC-ACCGG- -5'
23758 3' -54 NC_005261.1 + 111985 0.68 0.896766
Target:  5'- ---cGGG-GCGCUGGAGUccAUG-GGCCa -3'
miRNA:   3'- uguaCCUgCGCGACUUCA--UGCaCCGG- -5'
23758 3' -54 NC_005261.1 + 111936 0.7 0.792143
Target:  5'- uGCAgucg-GCGCUGAAGUACGaggagauguaccUGGCCa -3'
miRNA:   3'- -UGUaccugCGCGACUUCAUGC------------ACCGG- -5'
23758 3' -54 NC_005261.1 + 111607 0.69 0.852753
Target:  5'- -aGUGGGCGCgGCUGGGcUGCG-GcGCCg -3'
miRNA:   3'- ugUACCUGCG-CGACUUcAUGCaC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.