miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23758 5' -62.6 NC_005261.1 + 135295 0.67 0.533707
Target:  5'- cGGGUuccgcgcgaccGGCGUgucGCCCUGgGcGGCcGUGCu -3'
miRNA:   3'- uCCCG-----------CUGCA---CGGGACgC-CCGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 134857 0.68 0.459491
Target:  5'- cGGGGacaaGGCGcccgcGCCCccGCGGGCcccugcUGUGCg -3'
miRNA:   3'- -UCCCg---CUGCa----CGGGa-CGCCCG------ACACG- -5'
23758 5' -62.6 NC_005261.1 + 134565 0.66 0.55199
Target:  5'- uGGGCGGCGccgcggcUGCgCaggGCGGGcCUG-GCg -3'
miRNA:   3'- uCCCGCUGC-------ACGgGa--CGCCC-GACaCG- -5'
23758 5' -62.6 NC_005261.1 + 134241 0.66 0.552958
Target:  5'- cGuGGCGcACGcGCCCUGCGcGGCc--GCg -3'
miRNA:   3'- uC-CCGC-UGCaCGGGACGC-CCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 133818 0.7 0.3444
Target:  5'- -cGGCGACGagGCgCUGCGcGGCcgcGUGCg -3'
miRNA:   3'- ucCCGCUGCa-CGgGACGC-CCGa--CACG- -5'
23758 5' -62.6 NC_005261.1 + 132645 0.71 0.301826
Target:  5'- cGGGcGCGGCG-GCCCUaGCGGccGCguguggGUGCg -3'
miRNA:   3'- -UCC-CGCUGCaCGGGA-CGCC--CGa-----CACG- -5'
23758 5' -62.6 NC_005261.1 + 131677 0.66 0.601874
Target:  5'- aGGGuGCGACc-GCCCUGCGcGCg--GCg -3'
miRNA:   3'- -UCC-CGCUGcaCGGGACGCcCGacaCG- -5'
23758 5' -62.6 NC_005261.1 + 125709 0.68 0.441793
Target:  5'- -cGGCGACG-GCCgCcGCGGGCUcgGCu -3'
miRNA:   3'- ucCCGCUGCaCGG-GaCGCCCGAcaCG- -5'
23758 5' -62.6 NC_005261.1 + 124206 0.68 0.47756
Target:  5'- -cGGUGGCGUGaaCUGCGuGGCUGccaGCa -3'
miRNA:   3'- ucCCGCUGCACggGACGC-CCGACa--CG- -5'
23758 5' -62.6 NC_005261.1 + 123179 0.67 0.543305
Target:  5'- cGGGCGugGUGgCUggUGUGGGCg---- -3'
miRNA:   3'- uCCCGCugCACgGG--ACGCCCGacacg -5'
23758 5' -62.6 NC_005261.1 + 121807 0.71 0.308631
Target:  5'- gGGGGCG-CGUggcuggGCUCUGCGGGCcGccGCg -3'
miRNA:   3'- -UCCCGCuGCA------CGGGACGCCCGaCa-CG- -5'
23758 5' -62.6 NC_005261.1 + 121778 0.73 0.240094
Target:  5'- uGGGGUGGCcgcgGCCg-GCGGGCUGgGCa -3'
miRNA:   3'- -UCCCGCUGca--CGGgaCGCCCGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 121391 0.67 0.543305
Target:  5'- cGGcGGCGGCGccUGCCCgagUGCGacGGCUGccGCc -3'
miRNA:   3'- -UC-CCGCUGC--ACGGG---ACGC--CCGACa-CG- -5'
23758 5' -62.6 NC_005261.1 + 120306 0.7 0.351903
Target:  5'- gAGGGCGGCGagGCUguCUGCGaGGCgcgcUGCg -3'
miRNA:   3'- -UCCCGCUGCa-CGG--GACGC-CCGac--ACG- -5'
23758 5' -62.6 NC_005261.1 + 118856 0.71 0.301152
Target:  5'- gAGGGCGGCGcgcccgcgGCCCUggccucggccaccGCGGGCgcgcugGUGg -3'
miRNA:   3'- -UCCCGCUGCa-------CGGGA-------------CGCCCGa-----CACg -5'
23758 5' -62.6 NC_005261.1 + 118377 0.66 0.552958
Target:  5'- uGGGGCGcGCG-GCCCga-GGcGCUG-GCg -3'
miRNA:   3'- -UCCCGC-UGCaCGGGacgCC-CGACaCG- -5'
23758 5' -62.6 NC_005261.1 + 118307 0.67 0.505298
Target:  5'- cGGGGCGcacuuccgcaccGCGcUGCuggccaugaCCUGCGGGCUGcuccucgGCc -3'
miRNA:   3'- -UCCCGC------------UGC-ACG---------GGACGCCCGACa------CG- -5'
23758 5' -62.6 NC_005261.1 + 113287 0.67 0.542342
Target:  5'- gAGGGCGugGUcCUCUcgcugccGCGGGcCUGgGCc -3'
miRNA:   3'- -UCCCGCugCAcGGGA-------CGCCC-GACaCG- -5'
23758 5' -62.6 NC_005261.1 + 112422 0.66 0.571435
Target:  5'- cGGGCaucuGCGUguacaucgaGCCCuggcacugcgacgUGCGGGCcGUGCu -3'
miRNA:   3'- uCCCGc---UGCA---------CGGG-------------ACGCCCGaCACG- -5'
23758 5' -62.6 NC_005261.1 + 111755 0.69 0.424487
Target:  5'- cGGGCagcuCGUGCaCCUGCgcugcgcgcccGGGgUGUGCc -3'
miRNA:   3'- uCCCGcu--GCACG-GGACG-----------CCCgACACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.