miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23759 3' -61.8 NC_005261.1 + 97749 0.66 0.609885
Target:  5'- gGgGCggggCGGgcucGGCgGCGCGGCCg -3'
miRNA:   3'- aCgCGa---GCCaguaCCGgUGCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 62435 0.66 0.600011
Target:  5'- aGCGCgagcCGGUCGccgGGCCccaGCaGCGGCg- -3'
miRNA:   3'- aCGCGa---GCCAGUa--CCGG---UG-CGCCGgg -5'
23759 3' -61.8 NC_005261.1 + 12945 0.66 0.609885
Target:  5'- gUGCGCU---UC-UGGcCCGCGCGGCgCg -3'
miRNA:   3'- -ACGCGAgccAGuACC-GGUGCGCCGgG- -5'
23759 3' -61.8 NC_005261.1 + 130441 0.66 0.600011
Target:  5'- gGCGCcuacgUGGUCuccuacgacUGGCCcgaGCGGCUCg -3'
miRNA:   3'- aCGCGa----GCCAGu--------ACCGGug-CGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 1719 0.66 0.609885
Target:  5'- cGCGCggCGG-CAcgGGCaccgcgguGCGCGGgCCCa -3'
miRNA:   3'- aCGCGa-GCCaGUa-CCGg-------UGCGCC-GGG- -5'
23759 3' -61.8 NC_005261.1 + 60405 0.66 0.600011
Target:  5'- gGCGCcgggcCGGcCcgGGCC-CGgGGCCg -3'
miRNA:   3'- aCGCGa----GCCaGuaCCGGuGCgCCGGg -5'
23759 3' -61.8 NC_005261.1 + 20955 0.66 0.609885
Target:  5'- gGCuGUUUacgaGGUCGUGGaCCgcgGCGCGGCgCCc -3'
miRNA:   3'- aCG-CGAG----CCAGUACC-GG---UGCGCCG-GG- -5'
23759 3' -61.8 NC_005261.1 + 123885 0.66 0.600011
Target:  5'- gGCGCgcacuucgCGGaa--GGCCGCcgcugugggguGCGGCCCg -3'
miRNA:   3'- aCGCGa-------GCCaguaCCGGUG-----------CGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 66029 0.66 0.600011
Target:  5'- gGCGCgUCGuaGUCGgcGGCCACGgCcagccccgGGCCCg -3'
miRNA:   3'- aCGCG-AGC--CAGUa-CCGGUGC-G--------CCGGG- -5'
23759 3' -61.8 NC_005261.1 + 59703 0.66 0.605933
Target:  5'- cGCGCUcCGGgcagacccgcccgCcgGGCggcagcggcggCGCGCGGCCg -3'
miRNA:   3'- aCGCGA-GCCa------------GuaCCG-----------GUGCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 68281 0.66 0.597052
Target:  5'- cGCGCggCGGggcCccGGCCGCgggcgcggaccucuGCGGCCg -3'
miRNA:   3'- aCGCGa-GCCa--GuaCCGGUG--------------CGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 42632 0.66 0.600011
Target:  5'- aGCGgggaCUCGGcCGccgcGGCCGCGCGGaaCCa -3'
miRNA:   3'- aCGC----GAGCCaGUa---CCGGUGCGCCg-GG- -5'
23759 3' -61.8 NC_005261.1 + 59456 0.66 0.600011
Target:  5'- aGCGCggccgCGGcgUCGgggGGCagcgccgGCGCGGCCg -3'
miRNA:   3'- aCGCGa----GCC--AGUa--CCGg------UGCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 104919 0.66 0.609885
Target:  5'- aGgGCcgCGGUgAUGuuuGCCGCGCGcGCgCCa -3'
miRNA:   3'- aCgCGa-GCCAgUAC---CGGUGCGC-CG-GG- -5'
23759 3' -61.8 NC_005261.1 + 64303 0.66 0.65935
Target:  5'- gUGCGCauguuUCGcGUCGcGGCCguagccgugcccGCGUcagGGCCCg -3'
miRNA:   3'- -ACGCG-----AGC-CAGUaCCGG------------UGCG---CCGGG- -5'
23759 3' -61.8 NC_005261.1 + 78339 0.66 0.600011
Target:  5'- cGCGCcaacgCGGUaccucggGcGCCACGC-GCCCg -3'
miRNA:   3'- aCGCGa----GCCAgua----C-CGGUGCGcCGGG- -5'
23759 3' -61.8 NC_005261.1 + 75620 0.66 0.600011
Target:  5'- gGCG-UCGcGUaCGUGGacgacguccaCCGCGCGGCCg -3'
miRNA:   3'- aCGCgAGC-CA-GUACC----------GGUGCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 99700 0.66 0.605933
Target:  5'- gGCGCgccagcuccgccaCGGUCgcgcgcGUGGCCGCGUcaGGCgCg -3'
miRNA:   3'- aCGCGa------------GCCAG------UACCGGUGCG--CCGgG- -5'
23759 3' -61.8 NC_005261.1 + 59103 0.66 0.609885
Target:  5'- cGCGCUCG--CA-GGCgCGCGCGaGCUCc -3'
miRNA:   3'- aCGCGAGCcaGUaCCG-GUGCGC-CGGG- -5'
23759 3' -61.8 NC_005261.1 + 105143 0.66 0.606921
Target:  5'- cGCGCgcaGGUCcucgcGGCucgagggcggcgucCACGgGGCCCg -3'
miRNA:   3'- aCGCGag-CCAGua---CCG--------------GUGCgCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.