miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23759 3' -61.8 NC_005261.1 + 64303 0.66 0.65935
Target:  5'- gUGCGCauguuUCGcGUCGcGGCCguagccgugcccGCGUcagGGCCCg -3'
miRNA:   3'- -ACGCG-----AGC-CAGUaCCGG------------UGCG---CCGGG- -5'
23759 3' -61.8 NC_005261.1 + 94369 0.75 0.192836
Target:  5'- aGCGCacggcCGGUCgAUGGCCAgCGCGGCg- -3'
miRNA:   3'- aCGCGa----GCCAG-UACCGGU-GCGCCGgg -5'
23759 3' -61.8 NC_005261.1 + 31261 0.75 0.202343
Target:  5'- gGCGCUCGccuUCGaccccgaggcgcUGGCCGagauCGCGGCCCg -3'
miRNA:   3'- aCGCGAGCc--AGU------------ACCGGU----GCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 79860 0.75 0.207247
Target:  5'- cGCGCUgGGguugagCuUGGCCGCcuCGGCCCa -3'
miRNA:   3'- aCGCGAgCCa-----GuACCGGUGc-GCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 29411 0.75 0.207247
Target:  5'- cGCGCUacgCGGc---GGCCGCGgGGCCCg -3'
miRNA:   3'- aCGCGA---GCCaguaCCGGUGCgCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 29853 0.75 0.212253
Target:  5'- cGUGCUCGcc---GGCCGCGCGGCgCCg -3'
miRNA:   3'- aCGCGAGCcaguaCCGGUGCGCCG-GG- -5'
23759 3' -61.8 NC_005261.1 + 86875 0.75 0.212253
Target:  5'- gGCGCggCGGcCuUGGCCGCGCccuGGUCCg -3'
miRNA:   3'- aCGCGa-GCCaGuACCGGUGCG---CCGGG- -5'
23759 3' -61.8 NC_005261.1 + 22735 0.75 0.212253
Target:  5'- aGCGCcagUCGGgcgCggGGCgGCgGCGGCCCa -3'
miRNA:   3'- aCGCG---AGCCa--GuaCCGgUG-CGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 22491 0.74 0.217363
Target:  5'- aGCGCgcccgCGGgg--GGCCACGCGGCg- -3'
miRNA:   3'- aCGCGa----GCCaguaCCGGUGCGCCGgg -5'
23759 3' -61.8 NC_005261.1 + 121175 0.75 0.192836
Target:  5'- gGCGCUCGGUgCAcggGGCCGgGgccgGGCCCg -3'
miRNA:   3'- aCGCGAGCCA-GUa--CCGGUgCg---CCGGG- -5'
23759 3' -61.8 NC_005261.1 + 104266 0.76 0.179312
Target:  5'- aGCGCcgCGGUCucggcGGCUGCGCGGgCCu -3'
miRNA:   3'- aCGCGa-GCCAGua---CCGGUGCGCCgGG- -5'
23759 3' -61.8 NC_005261.1 + 83303 0.76 0.174567
Target:  5'- cUGCGCggGGUCGUGcagcucgggcggcGCCACGCcGCCCg -3'
miRNA:   3'- -ACGCGagCCAGUAC-------------CGGUGCGcCGGG- -5'
23759 3' -61.8 NC_005261.1 + 74956 0.81 0.084366
Target:  5'- cGCGCUCGGcgcgcUCGaGGCCGCGC-GCCCg -3'
miRNA:   3'- aCGCGAGCC-----AGUaCCGGUGCGcCGGG- -5'
23759 3' -61.8 NC_005261.1 + 4005 0.79 0.108953
Target:  5'- aGCGg-CGGcUCAUGGCCACGCaGGCCg -3'
miRNA:   3'- aCGCgaGCC-AGUACCGGUGCG-CCGGg -5'
23759 3' -61.8 NC_005261.1 + 133381 0.77 0.140138
Target:  5'- cUGCGCgCGGccCAcGGgCGCGCGGCCCa -3'
miRNA:   3'- -ACGCGaGCCa-GUaCCgGUGCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 101572 0.77 0.143673
Target:  5'- aUGCGCUCGGcgcgcgcCGUGGCCuccGCGCGcGCCg -3'
miRNA:   3'- -ACGCGAGCCa------GUACCGG---UGCGC-CGGg -5'
23759 3' -61.8 NC_005261.1 + 54059 0.77 0.150986
Target:  5'- gUGCGCUucgguagugCGGUCGaaGGCCGCGCGGaCCg -3'
miRNA:   3'- -ACGCGA---------GCCAGUa-CCGGUGCGCCgGG- -5'
23759 3' -61.8 NC_005261.1 + 134034 0.76 0.162592
Target:  5'- cGCGCUcgCGGcCAUGGCCGgcCaCGGCCCg -3'
miRNA:   3'- aCGCGA--GCCaGUACCGGU--GcGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 115833 0.76 0.162592
Target:  5'- cGCcaGCUUGGgcgCGuUGGcCCGCGCGGCCCc -3'
miRNA:   3'- aCG--CGAGCCa--GU-ACC-GGUGCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 77681 0.76 0.166635
Target:  5'- gGCGCggaCGGgCcgGGCUACGaCGGCCCc -3'
miRNA:   3'- aCGCGa--GCCaGuaCCGGUGC-GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.