miRNA display CGI


Results 1 - 20 of 357 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23759 3' -61.8 NC_005261.1 + 322 0.68 0.494149
Target:  5'- gGCgGCUgCGG-CGgcGGCUGCgGCGGCCCg -3'
miRNA:   3'- aCG-CGA-GCCaGUa-CCGGUG-CGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 450 0.66 0.639573
Target:  5'- cGgGgaCGGg---GGCCGCGaCGGCCg -3'
miRNA:   3'- aCgCgaGCCaguaCCGGUGC-GCCGGg -5'
23759 3' -61.8 NC_005261.1 + 1179 0.7 0.413435
Target:  5'- cGCGCcgCGGcCggGGCCggggccgggcgcgGCGCGGaCCCc -3'
miRNA:   3'- aCGCGa-GCCaGuaCCGG-------------UGCGCC-GGG- -5'
23759 3' -61.8 NC_005261.1 + 1454 0.7 0.389464
Target:  5'- gGCGcCUCGG-CGUgcGGCUccagcaGCGCGGCCg -3'
miRNA:   3'- aCGC-GAGCCaGUA--CCGG------UGCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 1719 0.66 0.609885
Target:  5'- cGCGCggCGG-CAcgGGCaccgcgguGCGCGGgCCCa -3'
miRNA:   3'- aCGCGa-GCCaGUa-CCGg-------UGCGCC-GGG- -5'
23759 3' -61.8 NC_005261.1 + 1905 0.68 0.531854
Target:  5'- cGCGC-CGcUCA-GGCCagcGCGCGGCgCa -3'
miRNA:   3'- aCGCGaGCcAGUaCCGG---UGCGCCGgG- -5'
23759 3' -61.8 NC_005261.1 + 1969 0.68 0.503467
Target:  5'- gUGCGCcugcccgaCGG-CcgGGCCAUcgGCGGCCa -3'
miRNA:   3'- -ACGCGa-------GCCaGuaCCGGUG--CGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 2267 0.69 0.475757
Target:  5'- gGCGCUC-GUCcucGCCGgGCGGCgCCg -3'
miRNA:   3'- aCGCGAGcCAGuacCGGUgCGCCG-GG- -5'
23759 3' -61.8 NC_005261.1 + 2421 0.68 0.484911
Target:  5'- cGCGCggCGG-CG-GGCCGCGaucuCGGCCa -3'
miRNA:   3'- aCGCGa-GCCaGUaCCGGUGC----GCCGGg -5'
23759 3' -61.8 NC_005261.1 + 2693 0.7 0.389464
Target:  5'- cGCGC-CGGcUUuUGGCCgGCGCcgGGCCCc -3'
miRNA:   3'- aCGCGaGCC-AGuACCGG-UGCG--CCGGG- -5'
23759 3' -61.8 NC_005261.1 + 2743 0.68 0.484911
Target:  5'- uUGCGCcgCGG-CG-GGCCGuCGCGGCg- -3'
miRNA:   3'- -ACGCGa-GCCaGUaCCGGU-GCGCCGgg -5'
23759 3' -61.8 NC_005261.1 + 2794 0.72 0.328231
Target:  5'- cUGcCGCcggCGGcCGggaggGGCCGgGCGGCCCc -3'
miRNA:   3'- -AC-GCGa--GCCaGUa----CCGGUgCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 2835 0.73 0.256134
Target:  5'- --aGCUCGGgcggCAgGGCCG-GCGGCCCc -3'
miRNA:   3'- acgCGAGCCa---GUaCCGGUgCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 2984 0.73 0.262114
Target:  5'- --gGCUgGGgcucGGCCugGCGGCCCg -3'
miRNA:   3'- acgCGAgCCaguaCCGGugCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 3359 0.73 0.268208
Target:  5'- cGCGC-CGGccuUCAgGGCCgcgaGCGCGGCCg -3'
miRNA:   3'- aCGCGaGCC---AGUaCCGG----UGCGCCGGg -5'
23759 3' -61.8 NC_005261.1 + 3426 0.66 0.649468
Target:  5'- aGCGCgCGGgccagCGUccaggcGGgCGCGCGGgCCg -3'
miRNA:   3'- aCGCGaGCCa----GUA------CCgGUGCGCCgGG- -5'
23759 3' -61.8 NC_005261.1 + 3583 0.68 0.535684
Target:  5'- cGCGCUCcaccgcGUCGcgGGCCGCGCcaagcagcucagcuGCCCg -3'
miRNA:   3'- aCGCGAGc-----CAGUa-CCGGUGCGc-------------CGGG- -5'
23759 3' -61.8 NC_005261.1 + 3665 0.71 0.350332
Target:  5'- aGCGCa-GGcCGcGGCCGgcaggcCGCGGCCCg -3'
miRNA:   3'- aCGCGagCCaGUaCCGGU------GCGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 3768 0.69 0.466689
Target:  5'- aGCGCcucgCGG-CA-GGCCGCagcgcaGCGGUCCg -3'
miRNA:   3'- aCGCGa---GCCaGUaCCGGUG------CGCCGGG- -5'
23759 3' -61.8 NC_005261.1 + 3840 0.73 0.274415
Target:  5'- gGCGCUggcggcagCGGcgCcgGcGCCGCGCGGCCg -3'
miRNA:   3'- aCGCGA--------GCCa-GuaC-CGGUGCGCCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.