miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 3' -58.5 NC_005261.1 + 51217 0.65 0.782113
Target:  5'- cGCUGCU-GCUGGGcGCGCUagccgccuggacgcUCCAGgCGg -3'
miRNA:   3'- uCGAUGAgCGGCCU-CGCGA--------------AGGUC-GU- -5'
23765 3' -58.5 NC_005261.1 + 82680 0.66 0.766199
Target:  5'- gAGCcGCUCGUCGGGcgccaccgccGCGCUcCCcacgAGCAg -3'
miRNA:   3'- -UCGaUGAGCGGCCU----------CGCGAaGG----UCGU- -5'
23765 3' -58.5 NC_005261.1 + 97845 0.66 0.737301
Target:  5'- gGGCgGCgggCGCCgccgcGGcAGCGCggCCGGCAu -3'
miRNA:   3'- -UCGaUGa--GCGG-----CC-UCGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 125027 0.66 0.766199
Target:  5'- cAGCagGCUcCGgUGGGGCGCUgacUCgGGCAg -3'
miRNA:   3'- -UCGa-UGA-GCgGCCUCGCGA---AGgUCGU- -5'
23765 3' -58.5 NC_005261.1 + 111099 0.66 0.747038
Target:  5'- gGGCcggggACUgGgUGGAGUGCUUCCAcugacGCAa -3'
miRNA:   3'- -UCGa----UGAgCgGCCUCGCGAAGGU-----CGU- -5'
23765 3' -58.5 NC_005261.1 + 12076 0.66 0.747038
Target:  5'- cAGCgGCguccgCGCCGGggcggcucaaaGGCGCggcgCCAGCu -3'
miRNA:   3'- -UCGaUGa----GCGGCC-----------UCGCGaa--GGUCGu -5'
23765 3' -58.5 NC_005261.1 + 93057 0.66 0.764303
Target:  5'- aAGCUGuuCUCGCUGGccacGCGCgccuuauauagaUCCAGCu -3'
miRNA:   3'- -UCGAU--GAGCGGCCu---CGCGa-----------AGGUCGu -5'
23765 3' -58.5 NC_005261.1 + 118347 0.66 0.737301
Target:  5'- gGGCUGCUCcucggccucucgGCCGG-GCGCUggggcgCgCGGCc -3'
miRNA:   3'- -UCGAUGAG------------CGGCCuCGCGAa-----G-GUCGu -5'
23765 3' -58.5 NC_005261.1 + 134435 0.66 0.766199
Target:  5'- cGCUGCUCGCgGGgcugcuggugaaGGCGCUcuacCUGGCc -3'
miRNA:   3'- uCGAUGAGCGgCC------------UCGCGAa---GGUCGu -5'
23765 3' -58.5 NC_005261.1 + 15492 0.66 0.756674
Target:  5'- cGCcGCUCGCugcgggCGGGGCGUgugUCGGCGu -3'
miRNA:   3'- uCGaUGAGCG------GCCUCGCGaa-GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 42681 0.66 0.766199
Target:  5'- gGGCcGC-CGCCGGcagccGCGCggccgCCAGCu -3'
miRNA:   3'- -UCGaUGaGCGGCCu----CGCGaa---GGUCGu -5'
23765 3' -58.5 NC_005261.1 + 58747 0.66 0.747038
Target:  5'- cGCUguuaagaaACUcccgCGCCGaGAGCGCccCCAGCGc -3'
miRNA:   3'- uCGA--------UGA----GCGGC-CUCGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 100233 0.66 0.766199
Target:  5'- cGGCcAC-CGCCGG-GCGCacgucugCCAGCc -3'
miRNA:   3'- -UCGaUGaGCGGCCuCGCGaa-----GGUCGu -5'
23765 3' -58.5 NC_005261.1 + 62068 0.66 0.737301
Target:  5'- cAGCUGCcccgccUCGCgCGaGGCGCUgcCCAGCu -3'
miRNA:   3'- -UCGAUG------AGCG-GCcUCGCGAa-GGUCGu -5'
23765 3' -58.5 NC_005261.1 + 19241 0.66 0.756674
Target:  5'- cGCgagACU-GCgGGGGCGCUgaaCAGCGc -3'
miRNA:   3'- uCGa--UGAgCGgCCUCGCGAag-GUCGU- -5'
23765 3' -58.5 NC_005261.1 + 109799 0.66 0.747038
Target:  5'- uGCUGCgacgGCCGGcGcCGCUUCCGccGCGg -3'
miRNA:   3'- uCGAUGag--CGGCCuC-GCGAAGGU--CGU- -5'
23765 3' -58.5 NC_005261.1 + 84611 0.66 0.766199
Target:  5'- uGCUGCcguugaugaucUCG-CGGAGCGCcuccaCCAGCGu -3'
miRNA:   3'- uCGAUG-----------AGCgGCCUCGCGaa---GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 17794 0.66 0.736322
Target:  5'- cGCcaacauCUCGCCGGucucgcgcaugcgGGCGUUgcacUCCAGCGa -3'
miRNA:   3'- uCGau----GAGCGGCC-------------UCGCGA----AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 3401 0.66 0.766199
Target:  5'- cGGC-ACUucCGCCGGcgggcugaagAGCGCgcgggCCAGCGu -3'
miRNA:   3'- -UCGaUGA--GCGGCC----------UCGCGaa---GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 93831 0.66 0.756674
Target:  5'- cGCaGC-CGCCGGgcGGCGCcgCCgAGCAg -3'
miRNA:   3'- uCGaUGaGCGGCC--UCGCGaaGG-UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.