miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 3' -58.5 NC_005261.1 + 1510 0.75 0.269418
Target:  5'- cGGCaGCUCGUCGG-GCGCcagcUCCAGCGc -3'
miRNA:   3'- -UCGaUGAGCGGCCuCGCGa---AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 2123 0.67 0.727472
Target:  5'- -cCUGCgCGCC-GAGCGCgcucacgUCCGGCGc -3'
miRNA:   3'- ucGAUGaGCGGcCUCGCGa------AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 2269 0.75 0.289141
Target:  5'- cGCUcgucCUCGCCGGgcGGCGCcgCCAGCGc -3'
miRNA:   3'- uCGAu---GAGCGGCC--UCGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 3401 0.66 0.766199
Target:  5'- cGGC-ACUucCGCCGGcgggcugaagAGCGCgcgggCCAGCGu -3'
miRNA:   3'- -UCGaUGA--GCGGCC----------UCGCGaa---GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 3848 0.7 0.525084
Target:  5'- cGGCaGCggCGCCGGcgccGCGCggCCGGCGa -3'
miRNA:   3'- -UCGaUGa-GCGGCCu---CGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 4416 0.72 0.396804
Target:  5'- cGCUGCcgggccaggccUCGCCGGAGgGCgucagcagcgggcccUCCAGCGg -3'
miRNA:   3'- uCGAUG-----------AGCGGCCUCgCGa--------------AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 11951 0.75 0.269418
Target:  5'- cGGCgGCUCGcCCGGcGCGCgcUCCAGCGc -3'
miRNA:   3'- -UCGaUGAGC-GGCCuCGCGa-AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 12076 0.66 0.747038
Target:  5'- cAGCgGCguccgCGCCGGggcggcucaaaGGCGCggcgCCAGCu -3'
miRNA:   3'- -UCGaUGa----GCGGCC-----------UCGCGaa--GGUCGu -5'
23765 3' -58.5 NC_005261.1 + 14443 0.69 0.595449
Target:  5'- cGGCUcGCUCG-CGGGGCGCg--CGGCGg -3'
miRNA:   3'- -UCGA-UGAGCgGCCUCGCGaagGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 15274 0.71 0.458099
Target:  5'- cGGCggcGC-CGCCGGGGCGCgcggUCgCGGCc -3'
miRNA:   3'- -UCGa--UGaGCGGCCUCGCGa---AG-GUCGu -5'
23765 3' -58.5 NC_005261.1 + 15492 0.66 0.756674
Target:  5'- cGCcGCUCGCugcgggCGGGGCGUgugUCGGCGu -3'
miRNA:   3'- uCGaUGAGCG------GCCUCGCGaa-GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 15784 0.66 0.775605
Target:  5'- cGCUgGCgggCGCCGcccGCGCggCCAGCGc -3'
miRNA:   3'- uCGA-UGa--GCGGCcu-CGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 16275 0.72 0.43081
Target:  5'- gGGCUucgGCUCGCCcgggGGGGCGCcgucgggcCCAGCGg -3'
miRNA:   3'- -UCGA---UGAGCGG----CCUCGCGaa------GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 17794 0.66 0.736322
Target:  5'- cGCcaacauCUCGCCGGucucgcgcaugcgGGCGUUgcacUCCAGCGa -3'
miRNA:   3'- uCGau----GAGCGGCC-------------UCGCGA----AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 18425 0.67 0.727472
Target:  5'- cAGCgcagacgucCUCGCCGGgcAGCGCgUUCCccguGCAg -3'
miRNA:   3'- -UCGau-------GAGCGGCC--UCGCG-AAGGu---CGU- -5'
23765 3' -58.5 NC_005261.1 + 19241 0.66 0.756674
Target:  5'- cGCgagACU-GCgGGGGCGCUgaaCAGCGc -3'
miRNA:   3'- uCGa--UGAgCGgCCUCGCGAag-GUCGU- -5'
23765 3' -58.5 NC_005261.1 + 21656 0.68 0.656872
Target:  5'- cGCUGCcgcacCGCCGGuacGUGCU-CCGGCu -3'
miRNA:   3'- uCGAUGa----GCGGCCu--CGCGAaGGUCGu -5'
23765 3' -58.5 NC_005261.1 + 21748 0.77 0.201243
Target:  5'- cGGCUGCUgCGCCuGGAGCGCgcgCCgGGCGa -3'
miRNA:   3'- -UCGAUGA-GCGG-CCUCGCGaa-GG-UCGU- -5'
23765 3' -58.5 NC_005261.1 + 23429 0.74 0.317176
Target:  5'- cGCUGCgCGUCGGGGCGCcagUCCucagGGCAg -3'
miRNA:   3'- uCGAUGaGCGGCCUCGCGa--AGG----UCGU- -5'
23765 3' -58.5 NC_005261.1 + 23617 0.68 0.646637
Target:  5'- cGCcGCU-GCCGGGGCGCggcgggggUCgGGCGg -3'
miRNA:   3'- uCGaUGAgCGGCCUCGCGa-------AGgUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.