miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 3' -58.5 NC_005261.1 + 51217 0.65 0.782113
Target:  5'- cGCUGCU-GCUGGGcGCGCUagccgccuggacgcUCCAGgCGg -3'
miRNA:   3'- uCGAUGAgCGGCCU-CGCGA--------------AGGUC-GU- -5'
23765 3' -58.5 NC_005261.1 + 108206 0.73 0.379223
Target:  5'- gAGCUGCgccaGCaCGGcGCGCU-CCAGCAu -3'
miRNA:   3'- -UCGAUGag--CG-GCCuCGCGAaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 4416 0.72 0.396804
Target:  5'- cGCUGCcgggccaggccUCGCCGGAGgGCgucagcagcgggcccUCCAGCGg -3'
miRNA:   3'- uCGAUG-----------AGCGGCCUCgCGa--------------AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 23989 0.72 0.413156
Target:  5'- gGGCUAgUCGCggCGGAGCGCUgcugCUAGgGg -3'
miRNA:   3'- -UCGAUgAGCG--GCCUCGCGAa---GGUCgU- -5'
23765 3' -58.5 NC_005261.1 + 64880 0.72 0.413156
Target:  5'- cAGCgGCg-GCgGGAGCGCcgggUCCAGCAg -3'
miRNA:   3'- -UCGaUGagCGgCCUCGCGa---AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 16275 0.72 0.43081
Target:  5'- gGGCUucgGCUCGCCcgggGGGGCGCcgucgggcCCAGCGg -3'
miRNA:   3'- -UCGA---UGAGCGG----CCUCGCGaa------GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 23781 0.71 0.438898
Target:  5'- cGGCUaggguggGCUCGCCGGGGCagg-CCGGCu -3'
miRNA:   3'- -UCGA-------UGAGCGGCCUCGcgaaGGUCGu -5'
23765 3' -58.5 NC_005261.1 + 23838 0.71 0.438898
Target:  5'- cGGCUaggguggGCUCGCCGGGGCagg-CCGGCu -3'
miRNA:   3'- -UCGA-------UGAGCGGCCUCGcgaaGGUCGu -5'
23765 3' -58.5 NC_005261.1 + 121952 0.71 0.457174
Target:  5'- cAGCUugaaccaGCUCGCCGugccGCGCU-CCAGCGc -3'
miRNA:   3'- -UCGA-------UGAGCGGCcu--CGCGAaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 51750 0.73 0.355029
Target:  5'- gGGCUGC-CGCUGGccgugaagcuGGCGCUggCCGGCGu -3'
miRNA:   3'- -UCGAUGaGCGGCC----------UCGCGAa-GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 106110 0.74 0.331943
Target:  5'- cGGCcgGCgUCGCCGGcGCGCgcgcgCCGGCAa -3'
miRNA:   3'- -UCGa-UG-AGCGGCCuCGCGaa---GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 59401 0.74 0.331943
Target:  5'- gAGCccggGCUCGCCGGcgccGGCGCUgucgcgcggcCCGGCAg -3'
miRNA:   3'- -UCGa---UGAGCGGCC----UCGCGAa---------GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 1510 0.75 0.269418
Target:  5'- cGGCaGCUCGUCGG-GCGCcagcUCCAGCGc -3'
miRNA:   3'- -UCGaUGAGCGGCCuCGCGa---AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 11951 0.75 0.269418
Target:  5'- cGGCgGCUCGcCCGGcGCGCgcUCCAGCGc -3'
miRNA:   3'- -UCGaUGAGC-GGCCuCGCGa-AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 71186 0.75 0.269418
Target:  5'- gGGCgcaGCUCG-CGGGGCGCggCCAGCu -3'
miRNA:   3'- -UCGa--UGAGCgGCCUCGCGaaGGUCGu -5'
23765 3' -58.5 NC_005261.1 + 104058 0.75 0.275869
Target:  5'- cAGCgcCUCgGCCGcGAGCGCgUCCAGCu -3'
miRNA:   3'- -UCGauGAG-CGGC-CUCGCGaAGGUCGu -5'
23765 3' -58.5 NC_005261.1 + 2269 0.75 0.289141
Target:  5'- cGCUcgucCUCGCCGGgcGGCGCcgCCAGCGc -3'
miRNA:   3'- uCGAu---GAGCGGCC--UCGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 29842 0.74 0.30998
Target:  5'- gAGCUgcgcgccguGCUCGCCGGccGCGCggcgCCGGCGc -3'
miRNA:   3'- -UCGA---------UGAGCGGCCu-CGCGaa--GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 23429 0.74 0.317176
Target:  5'- cGCUGCgCGUCGGGGCGCcagUCCucagGGCAg -3'
miRNA:   3'- uCGAUGaGCGGCCUCGCGa--AGG----UCGU- -5'
23765 3' -58.5 NC_005261.1 + 106642 0.74 0.324497
Target:  5'- gAGCUcggcgacgucgcGCUCGCCGGcGCGgUcgUCCAGCGc -3'
miRNA:   3'- -UCGA------------UGAGCGGCCuCGCgA--AGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.