miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 3' -47.1 NC_005261.1 + 2798 0.66 0.999844
Target:  5'- cGCCgGCGGCCGGGag-GGGccGGGCGg -3'
miRNA:   3'- cUGG-UGUCGGCUCaaaCUUuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 22828 0.66 0.999844
Target:  5'- cGCCGCcguuggcGCCGGGcucgGGGAAGAACa -3'
miRNA:   3'- cUGGUGu------CGGCUCaaa-CUUUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 56159 0.66 0.999844
Target:  5'- uGGCgGCAGCggCGGGgcccgcGggGAGGACGa -3'
miRNA:   3'- -CUGgUGUCG--GCUCaaa---CuuUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 90127 0.66 0.999844
Target:  5'- -cCCGCGG-CGAGggcgagGAGGGGGGCGa -3'
miRNA:   3'- cuGGUGUCgGCUCaaa---CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 33006 0.66 0.999844
Target:  5'- cGACCGgGGaaGGGgg-GAGGGGGGCGc -3'
miRNA:   3'- -CUGGUgUCggCUCaaaCUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 124749 0.66 0.999831
Target:  5'- -cCCGCAGCCGcagcggccgccuccAGgcUGA--GGAGCGg -3'
miRNA:   3'- cuGGUGUCGGC--------------UCaaACUuuUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 28099 0.66 0.999798
Target:  5'- cGCCGCAGCaaagGGGUUaGAGGGGGGgGc -3'
miRNA:   3'- cUGGUGUCGg---CUCAAaCUUUUCUUgC- -5'
23768 3' -47.1 NC_005261.1 + 23617 0.66 0.999798
Target:  5'- cGCCGCuGCCGGGgcgcggcggGGGucGGGCGg -3'
miRNA:   3'- cUGGUGuCGGCUCaaa------CUUuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 26056 0.66 0.999798
Target:  5'- cGGCCGCGGCCGc--UUGAAgcGAAa- -3'
miRNA:   3'- -CUGGUGUCGGCucaAACUUuuCUUgc -5'
23768 3' -47.1 NC_005261.1 + 3695 0.66 0.999798
Target:  5'- cGCUGCAGCCGAGagcaccGGGAGCu -3'
miRNA:   3'- cUGGUGUCGGCUCaaacuuUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 2943 0.66 0.999787
Target:  5'- cGCCGCGGCCGGGcuccggcccgGAcuAGGGCc -3'
miRNA:   3'- cUGGUGUCGGCUCaaa-------CUuuUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 1402 0.66 0.99974
Target:  5'- cGCCGCGGCCGcGgcggcGGcgGGGGCGg -3'
miRNA:   3'- cUGGUGUCGGCuCaaa--CUuuUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 30835 0.66 0.99974
Target:  5'- --aCGgGGCCGAGgagGAGGAGGAgGa -3'
miRNA:   3'- cugGUgUCGGCUCaaaCUUUUCUUgC- -5'
23768 3' -47.1 NC_005261.1 + 123009 0.66 0.999676
Target:  5'- cGGCCGCGGCCGuGgcguccgcGAGCGu -3'
miRNA:   3'- -CUGGUGUCGGCuCaaacuuuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 119879 0.66 0.999669
Target:  5'- cGCCGCAGCCGAGggcgUGuacaccuGGCGc -3'
miRNA:   3'- cUGGUGUCGGCUCaa--ACuuuuc--UUGC- -5'
23768 3' -47.1 NC_005261.1 + 22963 0.66 0.999669
Target:  5'- gGACgACgaGGCCGAGgaccggGAGGAGGcgGCGg -3'
miRNA:   3'- -CUGgUG--UCGGCUCaaa---CUUUUCU--UGC- -5'
23768 3' -47.1 NC_005261.1 + 28759 0.66 0.99954
Target:  5'- cGCCGCGGCCGGGggcgccuGGGccGCGg -3'
miRNA:   3'- cUGGUGUCGGCUCaaacuuuUCU--UGC- -5'
23768 3' -47.1 NC_005261.1 + 72571 0.67 0.999473
Target:  5'- cGCCGgGcGCCGAGUcccAAGAGGGCGa -3'
miRNA:   3'- cUGGUgU-CGGCUCAaacUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 8798 0.67 0.999341
Target:  5'- cGGCUGCAgccGCCGAGggcUUG-AAGGGGCGc -3'
miRNA:   3'- -CUGGUGU---CGGCUCa--AACuUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 5628 0.67 0.999341
Target:  5'- uGCUGCGGCgcgaCGAGUaggGggGGGGGCGg -3'
miRNA:   3'- cUGGUGUCG----GCUCAaa-CuuUUCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.