Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23773 | 3' | -57.5 | NC_005261.1 | + | 15063 | 0.69 | 0.691047 |
Target: 5'- gUCgCGGCGGgGUCGgGGGucaggcucgcccuCGUCCCGg -3' miRNA: 3'- -AGaGCUGCUgCAGCgCCCu------------GUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 2072 | 0.69 | 0.714542 |
Target: 5'- aCUCGACcGCGcCGCGGaaGGCcagGUCCCGc -3' miRNA: 3'- aGAGCUGcUGCaGCGCC--CUG---UAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 71071 | 0.69 | 0.724224 |
Target: 5'- --cCGcGCGGCGg-GCGGGGCGUCCgGg -3' miRNA: 3'- agaGC-UGCUGCagCGCCCUGUAGGgC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 16430 | 0.69 | 0.724224 |
Target: 5'- cCUCGACGGCGg-GCGGcGGCucguagCCCu -3' miRNA: 3'- aGAGCUGCUGCagCGCC-CUGua----GGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 27450 | 0.69 | 0.733831 |
Target: 5'- gUUUGGCGGCGggccgcccCGCGGGGCGggcaggCCCu -3' miRNA: 3'- aGAGCUGCUGCa-------GCGCCCUGUa-----GGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 115771 | 0.68 | 0.752785 |
Target: 5'- gUCUCGGCGGCGUCGaCGuacGCGUagCCCa -3' miRNA: 3'- -AGAGCUGCUGCAGC-GCcc-UGUA--GGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 109759 | 0.68 | 0.762114 |
Target: 5'- cUCcCGGCcgccGCGUCGCcgucucGGGCGUCCCGg -3' miRNA: 3'- -AGaGCUGc---UGCAGCGc-----CCUGUAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 93563 | 0.68 | 0.762114 |
Target: 5'- -gUCGACGGCGgugCgGCGGGACGcgaUCgCGc -3' miRNA: 3'- agAGCUGCUGCa--G-CGCCCUGU---AGgGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 49120 | 0.68 | 0.762114 |
Target: 5'- cCUCGagcGCGGCGg-GCGGGACc-CCCGc -3' miRNA: 3'- aGAGC---UGCUGCagCGCCCUGuaGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 47157 | 0.68 | 0.76766 |
Target: 5'- -gUCGGCGGCcgagaccaccaGCGGGACG-CCCGg -3' miRNA: 3'- agAGCUGCUGcag--------CGCCCUGUaGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 60929 | 0.68 | 0.771334 |
Target: 5'- --aCGGCGGCGaccCGCGGGcCGUggCCCGa -3' miRNA: 3'- agaGCUGCUGCa--GCGCCCuGUA--GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 59463 | 0.68 | 0.771334 |
Target: 5'- --cCG-CGGCGUCGgGGGGCAgCgCCGg -3' miRNA: 3'- agaGCuGCUGCAGCgCCCUGUaG-GGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 2991 | 0.68 | 0.771334 |
Target: 5'- gCUCGGCcuGGCGgcccggCGcCGGGGC-UCCCGc -3' miRNA: 3'- aGAGCUG--CUGCa-----GC-GCCCUGuAGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 23476 | 0.68 | 0.780434 |
Target: 5'- --gCGGCGGCGagugCGCGGGcCcgCCUGg -3' miRNA: 3'- agaGCUGCUGCa---GCGCCCuGuaGGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 30256 | 0.68 | 0.780434 |
Target: 5'- aCUCGACGcGCGgCGCGGcGGCccgcgcgCCCGc -3' miRNA: 3'- aGAGCUGC-UGCaGCGCC-CUGua-----GGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 87403 | 0.68 | 0.780434 |
Target: 5'- gUCUCGACGGCGccgUCGaCGGG-CG-CgCCGg -3' miRNA: 3'- -AGAGCUGCUGC---AGC-GCCCuGUaG-GGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 106450 | 0.68 | 0.780434 |
Target: 5'- -gUCGGCcACGUcCGCGcGGGCGUCCa- -3' miRNA: 3'- agAGCUGcUGCA-GCGC-CCUGUAGGgc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 19020 | 0.68 | 0.789409 |
Target: 5'- ---gGugGucaGCGUCGCGGGGCAg-CCGg -3' miRNA: 3'- agagCugC---UGCAGCGCCCUGUagGGC- -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 18711 | 0.68 | 0.789409 |
Target: 5'- -gUCGGCGAagcagagaucguCGggCGCGGGGCGcCCCa -3' miRNA: 3'- agAGCUGCU------------GCa-GCGCCCUGUaGGGc -5' |
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23773 | 3' | -57.5 | NC_005261.1 | + | 83737 | 0.68 | 0.798249 |
Target: 5'- gCUUGACGGCGUCGaGGuGGCGgcgcgCCaCGg -3' miRNA: 3'- aGAGCUGCUGCAGCgCC-CUGUa----GG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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