miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23773 5' -58.7 NC_005261.1 + 30274 0.69 0.560299
Target:  5'- ----cGGcccgCGCGCCCGCcuGGACGCUGGc -3'
miRNA:   3'- aaguaCCa---GUGCGGGCG--UCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 112138 0.69 0.58041
Target:  5'- -gCAgcuaGUCGUGCCCGC-GACGCCGAu -3'
miRNA:   3'- aaGUac--CAGUGCGGGCGuCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 121696 0.69 0.590523
Target:  5'- ----aGGUUGCGCauggaggCGUAGACGCCGAc -3'
miRNA:   3'- aaguaCCAGUGCGg------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 75661 0.69 0.590523
Target:  5'- gUUCcUGG-CGCGCgCGCAGAaccucuuccuCGCCGAg -3'
miRNA:   3'- -AAGuACCaGUGCGgGCGUCU----------GCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 21622 0.69 0.600667
Target:  5'- cUUCGggcgagGGUCccCGCCCcggcGCGGACGCCGc -3'
miRNA:   3'- -AAGUa-----CCAGu-GCGGG----CGUCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 110114 0.69 0.600667
Target:  5'- ----cGG-CGCGCCCGUccuGACGCUGAc -3'
miRNA:   3'- aaguaCCaGUGCGGGCGu--CUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 62399 0.68 0.606765
Target:  5'- gUCGUGGggaagagcagcucCGCGCCCGCcGAgGCCa- -3'
miRNA:   3'- aAGUACCa------------GUGCGGGCGuCUgCGGcu -5'
23773 5' -58.7 NC_005261.1 + 102445 0.68 0.61796
Target:  5'- ----cGG-CGCGCCgcccggccucggcgCGCAGGCGCCGGa -3'
miRNA:   3'- aaguaCCaGUGCGG--------------GCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 68617 0.68 0.621016
Target:  5'- -gCGUGGgggaggaugCGCGCCCGCccGCGaCCGAg -3'
miRNA:   3'- aaGUACCa--------GUGCGGGCGucUGC-GGCU- -5'
23773 5' -58.7 NC_005261.1 + 76441 0.68 0.621016
Target:  5'- -cCAUGGcggaCGCGCCCGaCGGcgacggcgGCGCCGGc -3'
miRNA:   3'- aaGUACCa---GUGCGGGC-GUC--------UGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 42273 0.68 0.641399
Target:  5'- ----cGGcCGCGCCCaGCAGcCGCCGc -3'
miRNA:   3'- aaguaCCaGUGCGGG-CGUCuGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 97215 0.68 0.641399
Target:  5'- ----cGGcCACGCUCGgAGGCGCUGGc -3'
miRNA:   3'- aaguaCCaGUGCGGGCgUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 97137 0.68 0.641399
Target:  5'- ----cGGcCACGCUCGgAGGCGCUGGc -3'
miRNA:   3'- aaguaCCaGUGCGGGCgUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 47432 0.68 0.641399
Target:  5'- --gGUGGgcgaaCACGUCCGaCAGGCGCCc- -3'
miRNA:   3'- aagUACCa----GUGCGGGC-GUCUGCGGcu -5'
23773 5' -58.7 NC_005261.1 + 78051 0.68 0.645474
Target:  5'- --gGUGGUCGCggGCCCGgcccccgcgccggccCAGGCGCUGGc -3'
miRNA:   3'- aagUACCAGUG--CGGGC---------------GUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 4511 0.68 0.651584
Target:  5'- -cCAgucgCGCGCCCGCgcGGGCGCCGc -3'
miRNA:   3'- aaGUaccaGUGCGGGCG--UCUGCGGCu -5'
23773 5' -58.7 NC_005261.1 + 91395 0.68 0.651584
Target:  5'- -aCGUGaucGUCGCGCCCGgcgaGGACGUgGAg -3'
miRNA:   3'- aaGUAC---CAGUGCGGGCg---UCUGCGgCU- -5'
23773 5' -58.7 NC_005261.1 + 21188 0.68 0.661753
Target:  5'- ---cUGGcgcgagCGCGgCCGCGGACGCUGGc -3'
miRNA:   3'- aaguACCa-----GUGCgGGCGUCUGCGGCU- -5'
23773 5' -58.7 NC_005261.1 + 119785 0.68 0.661753
Target:  5'- ----cGGUCGCGUaCCGCAG-CGCgGAg -3'
miRNA:   3'- aaguaCCAGUGCG-GGCGUCuGCGgCU- -5'
23773 5' -58.7 NC_005261.1 + 101529 0.67 0.671898
Target:  5'- gUCGcGGUCGCGCgCCGCcucGGcCGCCa- -3'
miRNA:   3'- aAGUaCCAGUGCG-GGCG---UCuGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.