miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 137775 0.69 0.40352
Target:  5'- gCGGggcgcgcccccGGGCCCCgCCGCccgCgCCGGCg -3'
miRNA:   3'- gGCC-----------UCCGGGGaGGCGauaGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 137677 0.69 0.39546
Target:  5'- cCCGGGGccccccaccGCCCCUCgugcaGCgggCCCCGcGCg -3'
miRNA:   3'- -GGCCUC---------CGGGGAGg----CGauaGGGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 134996 0.7 0.342032
Target:  5'- gCCGGGGcGCCCCUggcgcggcgggcCCGCacgcggCCgCGGCg -3'
miRNA:   3'- -GGCCUC-CGGGGA------------GGCGaua---GGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 133676 0.73 0.228385
Target:  5'- uCCGGcgccaacGGCUCgCUCCGCUGggagcugcgcgaCCCCGGCg -3'
miRNA:   3'- -GGCCu------CCGGG-GAGGCGAUa-----------GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 132921 0.66 0.602278
Target:  5'- gCGGcGGCUCCUgCC-CUucuacgugGUCCCCGaGCg -3'
miRNA:   3'- gGCCuCCGGGGA-GGcGA--------UAGGGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 131782 0.67 0.526183
Target:  5'- gCCGcuGGGCCCCgacgCCGCg--CCCgccgcgccugaCGGCg -3'
miRNA:   3'- -GGCc-UCCGGGGa---GGCGauaGGG-----------GCCG- -5'
23776 3' -63.4 NC_005261.1 + 131572 0.66 0.602278
Target:  5'- cCCGGcuGCCCC-CCGCgacggCCgaGGCc -3'
miRNA:   3'- -GGCCucCGGGGaGGCGaua--GGggCCG- -5'
23776 3' -63.4 NC_005261.1 + 129350 0.66 0.583021
Target:  5'- gCGGuAGcGCCCCcuUCCGCgcgcggGUCgCgCGGCu -3'
miRNA:   3'- gGCC-UC-CGGGG--AGGCGa-----UAG-GgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 129285 0.69 0.436776
Target:  5'- cCCGcGccGCCCCgcCCGC---CCCCGGCg -3'
miRNA:   3'- -GGC-CucCGGGGa-GGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 128335 0.67 0.498536
Target:  5'- gCGGGGGCUCCgagagCgGCa--CCCCGcGCg -3'
miRNA:   3'- gGCCUCCGGGGa----GgCGauaGGGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 127680 0.69 0.428314
Target:  5'- aCGGcGGCgg--CCGCUG-CCCCGGCg -3'
miRNA:   3'- gGCCuCCGgggaGGCGAUaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 126676 0.66 0.563892
Target:  5'- uCCgGGAGGCCcuCCUCCGagg---CCGGCg -3'
miRNA:   3'- -GG-CCUCCGG--GGAGGCgauaggGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 125305 0.71 0.313924
Target:  5'- gCCGGAcccgcGGgCgCUCCGCgg-CCUCGGCg -3'
miRNA:   3'- -GGCCU-----CCgGgGAGGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 124928 0.73 0.245766
Target:  5'- gCGGAGGCUCCgCCGCgcgcgcugUgCCGGCg -3'
miRNA:   3'- gGCCUCCGGGGaGGCGaua-----GgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 124783 0.67 0.544932
Target:  5'- gCGGGGGCCCUUCCGacagccgcUCgUCGcGCu -3'
miRNA:   3'- gGCCUCCGGGGAGGCgau-----AGgGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 124259 0.69 0.428314
Target:  5'- gCCGcGcGGCgCCgcCCGCgcgCCCCGGCc -3'
miRNA:   3'- -GGC-CuCCGgGGa-GGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 123571 0.66 0.602278
Target:  5'- aCGccGGCCCCcguacaCCGCUG-CgCCGGCu -3'
miRNA:   3'- gGCcuCCGGGGa-----GGCGAUaGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 121279 0.73 0.22944
Target:  5'- gCGGccGCCCCggccUCGCUcucguccccGUCCCCGGCu -3'
miRNA:   3'- gGCCucCGGGGa---GGCGA---------UAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 120665 0.66 0.602278
Target:  5'- gCGGGcGcGCCUgugauCUCgCGCgcgCCCCGGCg -3'
miRNA:   3'- gGCCU-C-CGGG-----GAG-GCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 118032 0.66 0.583021
Target:  5'- aCGcGGGGCCCggCCGCgacgCCCgcgcUGGCg -3'
miRNA:   3'- gGC-CUCCGGGgaGGCGaua-GGG----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.