miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 88972 0.79 0.093732
Target:  5'- cUCGGGGGCUaCCUCUGCgacaacuuucUCCCCGGCg -3'
miRNA:   3'- -GGCCUCCGG-GGAGGCGau--------AGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 24864 0.79 0.098541
Target:  5'- -gGGAGGCCCCUCCcacggcCUGUCCCCgcccccuugcccGGCg -3'
miRNA:   3'- ggCCUCCGGGGAGGc-----GAUAGGGG------------CCG- -5'
23776 3' -63.4 NC_005261.1 + 15233 0.77 0.122589
Target:  5'- gCCGGcguugAGGCCCCgcucgcagugggCCGCgaucgCCCCGGCg -3'
miRNA:   3'- -GGCC-----UCCGGGGa-----------GGCGaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 640 0.77 0.129403
Target:  5'- gCGGcGGCCgCCagcgCCGC-GUCCCCGGCg -3'
miRNA:   3'- gGCCuCCGG-GGa---GGCGaUAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 33861 0.77 0.1359
Target:  5'- gCCGGgaGGGCCCCccgCCGCccgCCuCCGGCg -3'
miRNA:   3'- -GGCC--UCCGGGGa--GGCGauaGG-GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 82443 0.76 0.157226
Target:  5'- cCCGGccGGCCCCgcgccgCCGUUGccgcCCCCGGCc -3'
miRNA:   3'- -GGCCu-CCGGGGa-----GGCGAUa---GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 78111 0.76 0.157606
Target:  5'- cCCGGccccGGCCCCaCCGCUcgccacccccgccgCCCCGGCg -3'
miRNA:   3'- -GGCCu---CCGGGGaGGCGAua------------GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 75984 0.76 0.161062
Target:  5'- cCCGGGcgcGGCcgCCCUCgCGCUGgacgCCCUGGCg -3'
miRNA:   3'- -GGCCU---CCG--GGGAG-GCGAUa---GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 72650 0.75 0.168988
Target:  5'- cCUGGGGGCCgCCUCgGgcccCCCCGGCg -3'
miRNA:   3'- -GGCCUCCGG-GGAGgCgauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 106029 0.75 0.185893
Target:  5'- aCCGGAGGCaCgCCaCCGCgcUgCCCGGCc -3'
miRNA:   3'- -GGCCUCCG-G-GGaGGCGauAgGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 32512 0.75 0.190346
Target:  5'- gCGGGGGgUCCgcgCCGCgcccggCCCCGGCc -3'
miRNA:   3'- gGCCUCCgGGGa--GGCGaua---GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 28198 0.74 0.199534
Target:  5'- gCCGGcGGCCUCgccgCCGCUG-CCgCGGCc -3'
miRNA:   3'- -GGCCuCCGGGGa---GGCGAUaGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 35709 0.74 0.219072
Target:  5'- gCCGGGGGCUCggUgGCgg-CCCCGGCc -3'
miRNA:   3'- -GGCCUCCGGGgaGgCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 15976 0.73 0.224205
Target:  5'- -gGGAGGgCCCgggCCGCUcaCCCgGGCa -3'
miRNA:   3'- ggCCUCCgGGGa--GGCGAuaGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 133676 0.73 0.228385
Target:  5'- uCCGGcgccaacGGCUCgCUCCGCUGggagcugcgcgaCCCCGGCg -3'
miRNA:   3'- -GGCCu------CCGGG-GAGGCGAUa-----------GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 121279 0.73 0.22944
Target:  5'- gCGGccGCCCCggccUCGCUcucguccccGUCCCCGGCu -3'
miRNA:   3'- gGCCucCGGGGa---GGCGA---------UAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 29271 0.73 0.245766
Target:  5'- gCUGGAGGgCCCgCUGCUGacgccCUCCGGCg -3'
miRNA:   3'- -GGCCUCCgGGGaGGCGAUa----GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 83057 0.73 0.245766
Target:  5'- -aGGGGGCuCCCUgCGCgccCCCgCGGCg -3'
miRNA:   3'- ggCCUCCG-GGGAgGCGauaGGG-GCCG- -5'
23776 3' -63.4 NC_005261.1 + 43413 0.73 0.245766
Target:  5'- gCCGGGGGCggCCUCCGC---CgCCGGCg -3'
miRNA:   3'- -GGCCUCCGg-GGAGGCGauaGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 124928 0.73 0.245766
Target:  5'- gCGGAGGCUCCgCCGCgcgcgcugUgCCGGCg -3'
miRNA:   3'- gGCCUCCGGGGaGGCGaua-----GgGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.