Results 21 - 40 of 193 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 10519 | 0.73 | 0.257178 |
Target: 5'- gCUGcGGGCCCCgcggcgcgCuCGCUGUcgcCCCCGGCg -3' miRNA: 3'- -GGCcUCCGGGGa-------G-GCGAUA---GGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 1365 | 0.72 | 0.263044 |
Target: 5'- cCCGcGGGCCCUggUCCGC-GUCCCaGGCc -3' miRNA: 3'- -GGCcUCCGGGG--AGGCGaUAGGGgCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 9848 | 0.72 | 0.27449 |
Target: 5'- cCCGGGGcaagcccGCCCCagCCGgcCUG-CCCCGGCg -3' miRNA: 3'- -GGCCUC-------CGGGGa-GGC--GAUaGGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 9905 | 0.72 | 0.27449 |
Target: 5'- cCCGGGGcaagcccGCCCCagCCGgcCUG-CCCCGGCg -3' miRNA: 3'- -GGCCUC-------CGGGGa-GGC--GAUaGGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 4723 | 0.72 | 0.275103 |
Target: 5'- cCCGGAgucggcGGCCCCagaGUcaucgGUCCCCGGCu -3' miRNA: 3'- -GGCCU------CCGGGGaggCGa----UAGGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 36579 | 0.72 | 0.2876 |
Target: 5'- gCGGGGGCCCg-CCGCgg-CCaCCGGg -3' miRNA: 3'- gGCCUCCGGGgaGGCGauaGG-GGCCg -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 4597 | 0.72 | 0.292723 |
Target: 5'- cCCGGcgccaGGGCucCCCUCgGCgucgguccccgaGUCCCCGGCc -3' miRNA: 3'- -GGCC-----UCCG--GGGAGgCGa-----------UAGGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 36376 | 0.71 | 0.30054 |
Target: 5'- uCUGGcacGGGCCCCagUCUGCcggCCCUGGCc -3' miRNA: 3'- -GGCC---UCCGGGG--AGGCGauaGGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 98970 | 0.71 | 0.30054 |
Target: 5'- cUCGGcAGGUCCCggagCaCGUcGUCCUCGGCa -3' miRNA: 3'- -GGCC-UCCGGGGa---G-GCGaUAGGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 105071 | 0.71 | 0.30054 |
Target: 5'- cCCGGcaGGGUCCgccgaCUCCGCg--CCCCGGa -3' miRNA: 3'- -GGCC--UCCGGG-----GAGGCGauaGGGGCCg -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 67917 | 0.71 | 0.307176 |
Target: 5'- cCCGG-GGCCCUUuuGCgucauUGUCCCCcccgccGGCc -3' miRNA: 3'- -GGCCuCCGGGGAggCG-----AUAGGGG------CCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 18381 | 0.71 | 0.313924 |
Target: 5'- gUCGGAGGUCCCaaagCCGCUGcggacgcgggCCUCGGa -3' miRNA: 3'- -GGCCUCCGGGGa---GGCGAUa---------GGGGCCg -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 125305 | 0.71 | 0.313924 |
Target: 5'- gCCGGAcccgcGGgCgCUCCGCgg-CCUCGGCg -3' miRNA: 3'- -GGCCU-----CCgGgGAGGCGauaGGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 111250 | 0.71 | 0.320784 |
Target: 5'- gCCGGgcccAGGCCaCCUgCCGCUGagagcgagCaCCCGGCc -3' miRNA: 3'- -GGCC----UCCGG-GGA-GGCGAUa-------G-GGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 115019 | 0.71 | 0.320784 |
Target: 5'- gCGGAGGCCUCgucccaauagUCUGCcagcaCCCUGGCg -3' miRNA: 3'- gGCCUCCGGGG----------AGGCGaua--GGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 98474 | 0.71 | 0.320784 |
Target: 5'- aCGGGcGGCCguCCUCCGCgggCUCgGGCg -3' miRNA: 3'- gGCCU-CCGG--GGAGGCGauaGGGgCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 103742 | 0.71 | 0.320784 |
Target: 5'- gCGGcGGCgCCCUCCGCcugcgCCUCGuGCa -3' miRNA: 3'- gGCCuCCG-GGGAGGCGaua--GGGGC-CG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 90094 | 0.71 | 0.321476 |
Target: 5'- aCGGGGGCCCgUUCGCcGgcugggccgacgcggCCCgCGGCg -3' miRNA: 3'- gGCCUCCGGGgAGGCGaUa--------------GGG-GCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 62551 | 0.71 | 0.334838 |
Target: 5'- gCCGaGAGGCgCCgCCaGCaugcgCCCCGGCg -3' miRNA: 3'- -GGC-CUCCGgGGaGG-CGaua--GGGGCCG- -5' |
|||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 134996 | 0.7 | 0.342032 |
Target: 5'- gCCGGGGcGCCCCUggcgcggcgggcCCGCacgcggCCgCGGCg -3' miRNA: 3'- -GGCCUC-CGGGGA------------GGCGaua---GGgGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home