miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 46491 0.66 0.590711
Target:  5'- ----cGGCgCCCUCCGCggggcgcagCCCGGCg -3'
miRNA:   3'- ggccuCCG-GGGAGGCGauag-----GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 118032 0.66 0.583021
Target:  5'- aCGcGGGGCCCggCCGCgacgCCCgcgcUGGCg -3'
miRNA:   3'- gGC-CUCCGGGgaGGCGaua-GGG----GCCG- -5'
23776 3' -63.4 NC_005261.1 + 106721 0.66 0.583021
Target:  5'- -aGGAagcGGCCcaCCUCgUGCag-CCCCGGCg -3'
miRNA:   3'- ggCCU---CCGG--GGAG-GCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 90767 0.66 0.583021
Target:  5'- cCCcGAGGCCgCCgaggCCGCUGcggcggCCGGCg -3'
miRNA:   3'- -GGcCUCCGG-GGa---GGCGAUagg---GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 129350 0.66 0.583021
Target:  5'- gCGGuAGcGCCCCcuUCCGCgcgcggGUCgCgCGGCu -3'
miRNA:   3'- gGCC-UC-CGGGG--AGGCGa-----UAG-GgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 38184 0.66 0.583021
Target:  5'- cCUGGAGGCCUgggCGCg--CCgCGGCg -3'
miRNA:   3'- -GGCCUCCGGGgagGCGauaGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 5127 0.66 0.582062
Target:  5'- gCGGGcGGCCCgccggcgCUCgCGCg--CCUCGGCc -3'
miRNA:   3'- gGCCU-CCGGG-------GAG-GCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 27455 0.66 0.580143
Target:  5'- gCGGcGGGCCgCC-CCGCggggcgggcaggcccUCCCCGGg -3'
miRNA:   3'- gGCC-UCCGG-GGaGGCGau-------------AGGGGCCg -5'
23776 3' -63.4 NC_005261.1 + 53321 0.66 0.573438
Target:  5'- -aGGAGGCCgcaggugugcgCCUCUGCgcccgCCCCcGCc -3'
miRNA:   3'- ggCCUCCGG-----------GGAGGCGaua--GGGGcCG- -5'
23776 3' -63.4 NC_005261.1 + 88096 0.66 0.573438
Target:  5'- aCGGggcgAGGCgCCC-CCGCg--CgCCGGCu -3'
miRNA:   3'- gGCC----UCCG-GGGaGGCGauaGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2816 0.66 0.573438
Target:  5'- gCCGGGcGGCCCCagcCCGag--CUCgGGCg -3'
miRNA:   3'- -GGCCU-CCGGGGa--GGCgauaGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 103094 0.66 0.573438
Target:  5'- gCCGGGcccaGCCCggCCaGCgc-CCCCGGCg -3'
miRNA:   3'- -GGCCUc---CGGGgaGG-CGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 100073 0.66 0.573438
Target:  5'- cCCGGGGgcgcgccgcGCCCCUcgccgccgCCGCUGccgccgCCCagCGGCg -3'
miRNA:   3'- -GGCCUC---------CGGGGA--------GGCGAUa-----GGG--GCCG- -5'
23776 3' -63.4 NC_005261.1 + 103043 0.66 0.573438
Target:  5'- gCCGcAGGgCCCagCGCcugUCCCGGCa -3'
miRNA:   3'- -GGCcUCCgGGGagGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 68287 0.66 0.571526
Target:  5'- gCGG-GGCCCCggCCGCgggcgcggaccUCUgCGGCc -3'
miRNA:   3'- gGCCuCCGGGGa-GGCGau---------AGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2410 0.66 0.569615
Target:  5'- cCCGcGGGCCCCgcgcggcggcgggCCGCga-UCUCGGCc -3'
miRNA:   3'- -GGCcUCCGGGGa------------GGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 52365 0.66 0.563892
Target:  5'- gCCGGA-GCCCgCggCgGCgg-CCCCGGUc -3'
miRNA:   3'- -GGCCUcCGGG-Ga-GgCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 4880 0.66 0.563892
Target:  5'- aCGGccGCCUCagCCGCggccgCCUCGGCu -3'
miRNA:   3'- gGCCucCGGGGa-GGCGaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 126676 0.66 0.563892
Target:  5'- uCCgGGAGGCCcuCCUCCGagg---CCGGCg -3'
miRNA:   3'- -GG-CCUCCGG--GGAGGCgauaggGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 110154 0.66 0.563892
Target:  5'- aUCGGcauGGCCgCCgccaCCGCgccCCCCGGg -3'
miRNA:   3'- -GGCCu--CCGG-GGa---GGCGauaGGGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.