Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 9848 | 0.72 | 0.27449 |
Target: 5'- cCCGGGGcaagcccGCCCCagCCGgcCUG-CCCCGGCg -3' miRNA: 3'- -GGCCUC-------CGGGGa-GGC--GAUaGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 9905 | 0.72 | 0.27449 |
Target: 5'- cCCGGGGcaagcccGCCCCagCCGgcCUG-CCCCGGCg -3' miRNA: 3'- -GGCCUC-------CGGGGa-GGC--GAUaGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 9962 | 0.67 | 0.543989 |
Target: 5'- cCCGGGGcaagcccGCCCCcCCGgacgcgCCUCGGCg -3' miRNA: 3'- -GGCCUC-------CGGGGaGGCgaua--GGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 10090 | 0.67 | 0.544932 |
Target: 5'- cCCGac--CCCCgCCGCg--CCCCGGCa -3' miRNA: 3'- -GGCcuccGGGGaGGCGauaGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 10519 | 0.73 | 0.257178 |
Target: 5'- gCUGcGGGCCCCgcggcgcgCuCGCUGUcgcCCCCGGCg -3' miRNA: 3'- -GGCcUCCGGGGa-------G-GCGAUA---GGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 10710 | 0.67 | 0.496715 |
Target: 5'- gCGGgccgccuccGGGCCCCccucuuccUCCGCcgccuccucccgGUCCUCGGCc -3' miRNA: 3'- gGCC---------UCCGGGG--------AGGCGa-----------UAGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 10971 | 0.66 | 0.612905 |
Target: 5'- -gGGccGCCCCgccCCGCgcccgacuggcgcugGUCCuCCGGCu -3' miRNA: 3'- ggCCucCGGGGa--GGCGa--------------UAGG-GGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 11835 | 0.66 | 0.611939 |
Target: 5'- gCGGGGGCCCCgcgggCgCGC-GUUCgCGaGCg -3' miRNA: 3'- gGCCUCCGGGGa----G-GCGaUAGGgGC-CG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 11935 | 0.7 | 0.379654 |
Target: 5'- gCGGcGGCCCgCgCCGCggcggcUCgCCCGGCg -3' miRNA: 3'- gGCCuCCGGG-GaGGCGau----AG-GGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 12432 | 0.66 | 0.611939 |
Target: 5'- gCGGAGGgCUUgcggcgucggCCGCgucggcgCCCCGGUa -3' miRNA: 3'- gGCCUCCgGGGa---------GGCGaua----GGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 13310 | 0.66 | 0.611939 |
Target: 5'- aCGGGGGCCUCguaCGCagcgCCCUcGCa -3' miRNA: 3'- gGCCUCCGGGGag-GCGaua-GGGGcCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 15074 | 0.67 | 0.539284 |
Target: 5'- gUCGGGGGUcaggcucgcccucguCCCggucUCCGaCgucUCCCCGGCc -3' miRNA: 3'- -GGCCUCCG---------------GGG----AGGC-Gau-AGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 15233 | 0.77 | 0.122589 |
Target: 5'- gCCGGcguugAGGCCCCgcucgcagugggCCGCgaucgCCCCGGCg -3' miRNA: 3'- -GGCC-----UCCGGGGa-----------GGCGaua--GGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 15976 | 0.73 | 0.224205 |
Target: 5'- -gGGAGGgCCCgggCCGCUcaCCCgGGCa -3' miRNA: 3'- ggCCUCCgGGGa--GGCGAuaGGGgCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 16266 | 0.66 | 0.602278 |
Target: 5'- gCCGG-GGCCgggCUUCgGCUcgCCCgGGg -3' miRNA: 3'- -GGCCuCCGG---GGAGgCGAuaGGGgCCg -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 17327 | 0.67 | 0.535529 |
Target: 5'- cCCGGcccGGCCCagcucCCGCcccgCCCgGGCa -3' miRNA: 3'- -GGCCu--CCGGGga---GGCGaua-GGGgCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 18381 | 0.71 | 0.313924 |
Target: 5'- gUCGGAGGUCCCaaagCCGCUGcggacgcgggCCUCGGa -3' miRNA: 3'- -GGCCUCCGGGGa---GGCGAUa---------GGGGCCg -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 19998 | 0.7 | 0.371911 |
Target: 5'- cCCGGccgcGGCCCCUgacCCGCacccGUCCgCGGUc -3' miRNA: 3'- -GGCCu---CCGGGGA---GGCGa---UAGGgGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 20207 | 0.68 | 0.480468 |
Target: 5'- gCCGccaaAGGCCCCgcgcCCGCUG--CCUGGCc -3' miRNA: 3'- -GGCc---UCCGGGGa---GGCGAUagGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 20314 | 0.69 | 0.406773 |
Target: 5'- aCGGcgacuGGGCCCCgagCCGCgcacgagcgacgCCCgCGGCu -3' miRNA: 3'- gGCC-----UCCGGGGa--GGCGaua---------GGG-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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