miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 16266 0.66 0.602278
Target:  5'- gCCGG-GGCCgggCUUCgGCUcgCCCgGGg -3'
miRNA:   3'- -GGCCuCCGG---GGAGgCGAuaGGGgCCg -5'
23776 3' -63.4 NC_005261.1 + 52365 0.66 0.563892
Target:  5'- gCCGGA-GCCCgCggCgGCgg-CCCCGGUc -3'
miRNA:   3'- -GGCCUcCGGG-Ga-GgCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 1212 0.66 0.592637
Target:  5'- gCGGAccCCCCgccgaugCCGCcGUCgCCGGCc -3'
miRNA:   3'- gGCCUccGGGGa------GGCGaUAGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 129350 0.66 0.583021
Target:  5'- gCGGuAGcGCCCCcuUCCGCgcgcggGUCgCgCGGCu -3'
miRNA:   3'- gGCC-UC-CGGGG--AGGCGa-----UAG-GgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2816 0.66 0.573438
Target:  5'- gCCGGGcGGCCCCagcCCGag--CUCgGGCg -3'
miRNA:   3'- -GGCCU-CCGGGGa--GGCgauaGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 33993 0.66 0.60614
Target:  5'- cCCGGAgcugGGCUCCUgCUGC-AUCUgccucgacgugaucaCCGGCg -3'
miRNA:   3'- -GGCCU----CCGGGGA-GGCGaUAGG---------------GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 61716 0.66 0.563892
Target:  5'- cCCGu-GuGCCCC-CC-CcAUCCCCGGCu -3'
miRNA:   3'- -GGCcuC-CGGGGaGGcGaUAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 53321 0.66 0.573438
Target:  5'- -aGGAGGCCgcaggugugcgCCUCUGCgcccgCCCCcGCc -3'
miRNA:   3'- ggCCUCCGG-----------GGAGGCGaua--GGGGcCG- -5'
23776 3' -63.4 NC_005261.1 + 4880 0.66 0.563892
Target:  5'- aCGGccGCCUCagCCGCggccgCCUCGGCu -3'
miRNA:   3'- gGCCucCGGGGa-GGCGaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 106721 0.66 0.583021
Target:  5'- -aGGAagcGGCCcaCCUCgUGCag-CCCCGGCg -3'
miRNA:   3'- ggCCU---CCGG--GGAG-GCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2410 0.66 0.569615
Target:  5'- cCCGcGGGCCCCgcgcggcggcgggCCGCga-UCUCGGCc -3'
miRNA:   3'- -GGCcUCCGGGGa------------GGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 49503 0.66 0.602278
Target:  5'- -aGGAGGCCggugaCCUCCGaaaagGUCgCgGGCc -3'
miRNA:   3'- ggCCUCCGG-----GGAGGCga---UAGgGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 126676 0.66 0.563892
Target:  5'- uCCgGGAGGCCcuCCUCCGagg---CCGGCg -3'
miRNA:   3'- -GG-CCUCCGG--GGAGGCgauaggGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 51912 0.66 0.599383
Target:  5'- cCCGGGcgcgcagcggccgcGGCCUggucCCGCUcGUCgCCGGCg -3'
miRNA:   3'- -GGCCU--------------CCGGGga--GGCGA-UAGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 25344 0.66 0.560085
Target:  5'- -gGGGGGCCCUccccacaaacCCGCUuggaacaaaaaCCCGGCa -3'
miRNA:   3'- ggCCUCCGGGGa---------GGCGAuag--------GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 68287 0.66 0.571526
Target:  5'- gCGG-GGCCCCggCCGCgggcgcggaccUCUgCGGCc -3'
miRNA:   3'- gGCCuCCGGGGa-GGCGau---------AGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 1993 0.66 0.602278
Target:  5'- aUCGGcGGCCagUUCGCgggGUCCaCGGCg -3'
miRNA:   3'- -GGCCuCCGGggAGGCGa--UAGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 100073 0.66 0.573438
Target:  5'- cCCGGGGgcgcgccgcGCCCCUcgccgccgCCGCUGccgccgCCCagCGGCg -3'
miRNA:   3'- -GGCCUC---------CGGGGA--------GGCGAUa-----GGG--GCCG- -5'
23776 3' -63.4 NC_005261.1 + 87360 0.66 0.592637
Target:  5'- cUCGGGGcuaGCgCCCaCCGCgcggcagaUGUCCUCGGCc -3'
miRNA:   3'- -GGCCUC---CG-GGGaGGCG--------AUAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 120665 0.66 0.602278
Target:  5'- gCGGGcGcGCCUgugauCUCgCGCgcgCCCCGGCg -3'
miRNA:   3'- gGCCU-C-CGGG-----GAG-GCGauaGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.