miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 92 0.69 0.40352
Target:  5'- gCGGggcgcgcccccGGGCCCCgCCGCccgCgCCGGCg -3'
miRNA:   3'- gGCC-----------UCCGGGGaGGCGauaGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 640 0.77 0.129403
Target:  5'- gCGGcGGCCgCCagcgCCGC-GUCCCCGGCg -3'
miRNA:   3'- gGCCuCCGG-GGa---GGCGaUAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 723 0.69 0.39546
Target:  5'- cCCGGucGGCCCCcuccUCCGCgGUCCCUc-- -3'
miRNA:   3'- -GGCCu-CCGGGG----AGGCGaUAGGGGccg -5'
23776 3' -63.4 NC_005261.1 + 1212 0.66 0.592637
Target:  5'- gCGGAccCCCCgccgaugCCGCcGUCgCCGGCc -3'
miRNA:   3'- gGCCUccGGGGa------GGCGaUAGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 1365 0.72 0.263044
Target:  5'- cCCGcGGGCCCUggUCCGC-GUCCCaGGCc -3'
miRNA:   3'- -GGCcUCCGGGG--AGGCGaUAGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 1603 0.68 0.462726
Target:  5'- gCGGuGGCuggccgccucgCCCUCCGCgaaguccggcUCCCCGaGCc -3'
miRNA:   3'- gGCCuCCG-----------GGGAGGCGau--------AGGGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 1993 0.66 0.602278
Target:  5'- aUCGGcGGCCagUUCGCgggGUCCaCGGCg -3'
miRNA:   3'- -GGCCuCCGGggAGGCGa--UAGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2280 0.67 0.498536
Target:  5'- gCCGGGcGGCgCCgCCaGCgccUCCCCGGg -3'
miRNA:   3'- -GGCCU-CCGgGGaGG-CGau-AGGGGCCg -5'
23776 3' -63.4 NC_005261.1 + 2410 0.66 0.569615
Target:  5'- cCCGcGGGCCCCgcgcggcggcgggCCGCga-UCUCGGCc -3'
miRNA:   3'- -GGCcUCCGGGGa------------GGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2660 0.7 0.371911
Target:  5'- gCGGcGGCUCCcgCCGCgcuggggaCCCGGCg -3'
miRNA:   3'- gGCCuCCGGGGa-GGCGauag----GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2707 0.67 0.535529
Target:  5'- gCCGGcgccGGGCCCCUgg-----CCCCGGCc -3'
miRNA:   3'- -GGCC----UCCGGGGAggcgauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2816 0.66 0.573438
Target:  5'- gCCGGGcGGCCCCagcCCGag--CUCgGGCg -3'
miRNA:   3'- -GGCCU-CCGGGGa--GGCgauaGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 4467 0.69 0.419949
Target:  5'- gCGGcGGCCCgUCgCGCggcgCCgCGGCg -3'
miRNA:   3'- gGCCuCCGGGgAG-GCGaua-GGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 4597 0.72 0.292723
Target:  5'- cCCGGcgccaGGGCucCCCUCgGCgucgguccccgaGUCCCCGGCc -3'
miRNA:   3'- -GGCC-----UCCG--GGGAGgCGa-----------UAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 4723 0.72 0.275103
Target:  5'- cCCGGAgucggcGGCCCCagaGUcaucgGUCCCCGGCu -3'
miRNA:   3'- -GGCCU------CCGGGGaggCGa----UAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 4880 0.66 0.563892
Target:  5'- aCGGccGCCUCagCCGCggccgCCUCGGCu -3'
miRNA:   3'- gGCCucCGGGGa-GGCGaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 4934 0.68 0.485856
Target:  5'- gCCGcGAGcGCCCgCgCCGCggcccaggcgcCCCCGGCc -3'
miRNA:   3'- -GGC-CUC-CGGG-GaGGCGaua--------GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 5127 0.66 0.582062
Target:  5'- gCGGGcGGCCCgccggcgCUCgCGCg--CCUCGGCc -3'
miRNA:   3'- gGCCU-CCGGG-------GAG-GCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 6907 0.67 0.554388
Target:  5'- -aGGcAGGuuccCCCCUCCuGCUcuccuucucAUCCuCCGGCu -3'
miRNA:   3'- ggCC-UCC----GGGGAGG-CGA---------UAGG-GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 8238 0.67 0.554388
Target:  5'- aUGGGGGauCCCCUUCccaCUcaagCCCCGGCu -3'
miRNA:   3'- gGCCUCC--GGGGAGGc--GAua--GGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.