miRNA display CGI


Results 41 - 60 of 193 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 73860 0.66 0.563892
Target:  5'- cCCGGAGGCUuuUaaGCgggucgugggcgUGUCCCUGaGCu -3'
miRNA:   3'- -GGCCUCCGGggAggCG------------AUAGGGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 4880 0.66 0.563892
Target:  5'- aCGGccGCCUCagCCGCggccgCCUCGGCu -3'
miRNA:   3'- gGCCucCGGGGa-GGCGaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 52365 0.66 0.563892
Target:  5'- gCCGGA-GCCCgCggCgGCgg-CCCCGGUc -3'
miRNA:   3'- -GGCCUcCGGG-Ga-GgCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 25344 0.66 0.560085
Target:  5'- -gGGGGGCCCUccccacaaacCCGCUuggaacaaaaaCCCGGCa -3'
miRNA:   3'- ggCCUCCGGGGa---------GGCGAuag--------GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 37684 0.67 0.554388
Target:  5'- uCCGGAgucuucGGCCCCggCGCcuucGUCCCCcaagcccucGGCc -3'
miRNA:   3'- -GGCCU------CCGGGGagGCGa---UAGGGG---------CCG- -5'
23776 3' -63.4 NC_005261.1 + 37028 0.67 0.554388
Target:  5'- gCGGGGGCgggaaacgCCCaaCCGcCUGcCCCCGGUc -3'
miRNA:   3'- gGCCUCCG--------GGGa-GGC-GAUaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 8238 0.67 0.554388
Target:  5'- aUGGGGGauCCCCUUCccaCUcaagCCCCGGCu -3'
miRNA:   3'- gGCCUCC--GGGGAGGc--GAua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 6907 0.67 0.554388
Target:  5'- -aGGcAGGuuccCCCCUCCuGCUcuccuucucAUCCuCCGGCu -3'
miRNA:   3'- ggCC-UCC----GGGGAGG-CGA---------UAGG-GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 71772 0.67 0.554388
Target:  5'- gCCGGAccgcGGCCCgCUCgcaGCUGagcgcggCCCGGCc -3'
miRNA:   3'- -GGCCU----CCGGG-GAGg--CGAUag-----GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 94397 0.67 0.554388
Target:  5'- gCGGcGGCCuCCUCgacgaagggCGCgacGUCCgCGGCg -3'
miRNA:   3'- gGCCuCCGG-GGAG---------GCGa--UAGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 29047 0.67 0.544932
Target:  5'- aCGGGGGCCg--CCGCcg-CCgCGGCc -3'
miRNA:   3'- gGCCUCCGGggaGGCGauaGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 43815 0.67 0.544932
Target:  5'- gCCGGGcGCgCCCUCCGUggagaagcUgCUCGGCg -3'
miRNA:   3'- -GGCCUcCG-GGGAGGCGau------AgGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 10090 0.67 0.544932
Target:  5'- cCCGac--CCCCgCCGCg--CCCCGGCa -3'
miRNA:   3'- -GGCcuccGGGGaGGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 124783 0.67 0.544932
Target:  5'- gCGGGGGCCCUUCCGacagccgcUCgUCGcGCu -3'
miRNA:   3'- gGCCUCCGGGGAGGCgau-----AGgGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 9962 0.67 0.543989
Target:  5'- cCCGGGGcaagcccGCCCCcCCGgacgcgCCUCGGCg -3'
miRNA:   3'- -GGCCUC-------CGGGGaGGCgaua--GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 15074 0.67 0.539284
Target:  5'- gUCGGGGGUcaggcucgcccucguCCCggucUCCGaCgucUCCCCGGCc -3'
miRNA:   3'- -GGCCUCCG---------------GGG----AGGC-Gau-AGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 46107 0.67 0.535529
Target:  5'- gCCGGGGGCCgUggUCCGC-GUCCagcaGGUc -3'
miRNA:   3'- -GGCCUCCGGgG--AGGCGaUAGGgg--CCG- -5'
23776 3' -63.4 NC_005261.1 + 37569 0.67 0.535529
Target:  5'- aCCGGGGuGCgUC-CUGCcg-CCCCGGUa -3'
miRNA:   3'- -GGCCUC-CGgGGaGGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 32292 0.67 0.535529
Target:  5'- gCUGGAGGCgggcgccgccCCCgccgccgCCGCgg-CCgCGGCg -3'
miRNA:   3'- -GGCCUCCG----------GGGa------GGCGauaGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2707 0.67 0.535529
Target:  5'- gCCGGcgccGGGCCCCUgg-----CCCCGGCc -3'
miRNA:   3'- -GGCC----UCCGGGGAggcgauaGGGGCCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.