Results 41 - 60 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23776 | 3' | -63.4 | NC_005261.1 | + | 73860 | 0.66 | 0.563892 |
Target: 5'- cCCGGAGGCUuuUaaGCgggucgugggcgUGUCCCUGaGCu -3' miRNA: 3'- -GGCCUCCGGggAggCG------------AUAGGGGC-CG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 4880 | 0.66 | 0.563892 |
Target: 5'- aCGGccGCCUCagCCGCggccgCCUCGGCu -3' miRNA: 3'- gGCCucCGGGGa-GGCGaua--GGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 52365 | 0.66 | 0.563892 |
Target: 5'- gCCGGA-GCCCgCggCgGCgg-CCCCGGUc -3' miRNA: 3'- -GGCCUcCGGG-Ga-GgCGauaGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 25344 | 0.66 | 0.560085 |
Target: 5'- -gGGGGGCCCUccccacaaacCCGCUuggaacaaaaaCCCGGCa -3' miRNA: 3'- ggCCUCCGGGGa---------GGCGAuag--------GGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 37684 | 0.67 | 0.554388 |
Target: 5'- uCCGGAgucuucGGCCCCggCGCcuucGUCCCCcaagcccucGGCc -3' miRNA: 3'- -GGCCU------CCGGGGagGCGa---UAGGGG---------CCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 37028 | 0.67 | 0.554388 |
Target: 5'- gCGGGGGCgggaaacgCCCaaCCGcCUGcCCCCGGUc -3' miRNA: 3'- gGCCUCCG--------GGGa-GGC-GAUaGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 8238 | 0.67 | 0.554388 |
Target: 5'- aUGGGGGauCCCCUUCccaCUcaagCCCCGGCu -3' miRNA: 3'- gGCCUCC--GGGGAGGc--GAua--GGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 6907 | 0.67 | 0.554388 |
Target: 5'- -aGGcAGGuuccCCCCUCCuGCUcuccuucucAUCCuCCGGCu -3' miRNA: 3'- ggCC-UCC----GGGGAGG-CGA---------UAGG-GGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 71772 | 0.67 | 0.554388 |
Target: 5'- gCCGGAccgcGGCCCgCUCgcaGCUGagcgcggCCCGGCc -3' miRNA: 3'- -GGCCU----CCGGG-GAGg--CGAUag-----GGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 94397 | 0.67 | 0.554388 |
Target: 5'- gCGGcGGCCuCCUCgacgaagggCGCgacGUCCgCGGCg -3' miRNA: 3'- gGCCuCCGG-GGAG---------GCGa--UAGGgGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 29047 | 0.67 | 0.544932 |
Target: 5'- aCGGGGGCCg--CCGCcg-CCgCGGCc -3' miRNA: 3'- gGCCUCCGGggaGGCGauaGGgGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 43815 | 0.67 | 0.544932 |
Target: 5'- gCCGGGcGCgCCCUCCGUggagaagcUgCUCGGCg -3' miRNA: 3'- -GGCCUcCG-GGGAGGCGau------AgGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 10090 | 0.67 | 0.544932 |
Target: 5'- cCCGac--CCCCgCCGCg--CCCCGGCa -3' miRNA: 3'- -GGCcuccGGGGaGGCGauaGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 124783 | 0.67 | 0.544932 |
Target: 5'- gCGGGGGCCCUUCCGacagccgcUCgUCGcGCu -3' miRNA: 3'- gGCCUCCGGGGAGGCgau-----AGgGGC-CG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 9962 | 0.67 | 0.543989 |
Target: 5'- cCCGGGGcaagcccGCCCCcCCGgacgcgCCUCGGCg -3' miRNA: 3'- -GGCCUC-------CGGGGaGGCgaua--GGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 15074 | 0.67 | 0.539284 |
Target: 5'- gUCGGGGGUcaggcucgcccucguCCCggucUCCGaCgucUCCCCGGCc -3' miRNA: 3'- -GGCCUCCG---------------GGG----AGGC-Gau-AGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 46107 | 0.67 | 0.535529 |
Target: 5'- gCCGGGGGCCgUggUCCGC-GUCCagcaGGUc -3' miRNA: 3'- -GGCCUCCGGgG--AGGCGaUAGGgg--CCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 37569 | 0.67 | 0.535529 |
Target: 5'- aCCGGGGuGCgUC-CUGCcg-CCCCGGUa -3' miRNA: 3'- -GGCCUC-CGgGGaGGCGauaGGGGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 32292 | 0.67 | 0.535529 |
Target: 5'- gCUGGAGGCgggcgccgccCCCgccgccgCCGCgg-CCgCGGCg -3' miRNA: 3'- -GGCCUCCG----------GGGa------GGCGauaGGgGCCG- -5' |
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23776 | 3' | -63.4 | NC_005261.1 | + | 2707 | 0.67 | 0.535529 |
Target: 5'- gCCGGcgccGGGCCCCUgg-----CCCCGGCc -3' miRNA: 3'- -GGCC----UCCGGGGAggcgauaGGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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