miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 98567 0.7 0.342032
Target:  5'- gCGGGcGGCCguCCUCCGCgggCUCgGGCg -3'
miRNA:   3'- gGCCU-CCGG--GGAGGCGauaGGGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 48768 0.7 0.342032
Target:  5'- cCCGGGcGGCCCgacgagCUCgGCgAUCgCCGGCu -3'
miRNA:   3'- -GGCCU-CCGGG------GAGgCGaUAGgGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 31919 0.7 0.349336
Target:  5'- cCCGG-GGCgCCgCCGCUGggcucugCCgCGGCg -3'
miRNA:   3'- -GGCCuCCGgGGaGGCGAUa------GGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 30906 0.7 0.356005
Target:  5'- gCUGGGgccgcccGGCCCCUCC-Cgg-CCgCCGGCg -3'
miRNA:   3'- -GGCCU-------CCGGGGAGGcGauaGG-GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 68187 0.7 0.356752
Target:  5'- gCCGcGGGCCCCcUCGCccccgCCgCCGGCg -3'
miRNA:   3'- -GGCcUCCGGGGaGGCGaua--GG-GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 73106 0.7 0.356752
Target:  5'- aCGGcGGCCagaaagcccgCgUCCGCgcgGUCCCCGGg -3'
miRNA:   3'- gGCCuCCGG----------GgAGGCGa--UAGGGGCCg -5'
23776 3' -63.4 NC_005261.1 + 66655 0.7 0.356752
Target:  5'- gUCGGccGCCuCCUCCGCgagcagCCCCaGCg -3'
miRNA:   3'- -GGCCucCGG-GGAGGCGaua---GGGGcCG- -5'
23776 3' -63.4 NC_005261.1 + 49959 0.7 0.356752
Target:  5'- -aGGAGGCggcgCCgUCGUcAUCCCCGGCg -3'
miRNA:   3'- ggCCUCCGg---GGaGGCGaUAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 105196 0.7 0.36352
Target:  5'- gCGGcAGGCUCgUCCGCUuUCCCgccgcgcgggccgCGGCc -3'
miRNA:   3'- gGCC-UCCGGGgAGGCGAuAGGG-------------GCCG- -5'
23776 3' -63.4 NC_005261.1 + 85014 0.7 0.364277
Target:  5'- gCCGcGGGGUCgCgcggCCGCcgcgCCCCGGCc -3'
miRNA:   3'- -GGC-CUCCGGgGa---GGCGaua-GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 2660 0.7 0.371911
Target:  5'- gCGGcGGCUCCcgCCGCgcuggggaCCCGGCg -3'
miRNA:   3'- gGCCuCCGGGGa-GGCGauag----GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 19998 0.7 0.371911
Target:  5'- cCCGGccgcGGCCCCUgacCCGCacccGUCCgCGGUc -3'
miRNA:   3'- -GGCCu---CCGGGGA---GGCGa---UAGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 73919 0.7 0.371911
Target:  5'- gCCGGcGGCCCgaCUGCgugugccugCUCCGGCu -3'
miRNA:   3'- -GGCCuCCGGGgaGGCGaua------GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 114988 0.7 0.371911
Target:  5'- uUGGcGGGCCggCCgCCGCgg-CCCCGGCc -3'
miRNA:   3'- gGCC-UCCGG--GGaGGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 41019 0.7 0.378875
Target:  5'- gCCGcgaagacGAGGUCgUcgUCGUUGUCCCCGGCg -3'
miRNA:   3'- -GGC-------CUCCGGgGa-GGCGAUAGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 11935 0.7 0.379654
Target:  5'- gCGGcGGCCCgCgCCGCggcggcUCgCCCGGCg -3'
miRNA:   3'- gGCCuCCGGG-GaGGCGau----AG-GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 108645 0.7 0.379654
Target:  5'- uCCGcGaAGGCC--UCCGCcagCCCCGGCg -3'
miRNA:   3'- -GGC-C-UCCGGggAGGCGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 104460 0.7 0.386714
Target:  5'- gCCGGcGGCgccguccaccucgCCCUCCaGCUcgUCCaCGGCg -3'
miRNA:   3'- -GGCCuCCG-------------GGGAGG-CGAuaGGG-GCCG- -5'
23776 3' -63.4 NC_005261.1 + 36604 0.7 0.387504
Target:  5'- -gGGGGGCagCgCUCCuGCg--CCCCGGCg -3'
miRNA:   3'- ggCCUCCGg-G-GAGG-CGauaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 110826 0.7 0.387504
Target:  5'- aCGG-GGCCgCggacgaguuUCCGCUGcccgCCCUGGCg -3'
miRNA:   3'- gGCCuCCGGgG---------AGGCGAUa---GGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.