Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23777 | 3' | -55 | NC_005261.1 | + | 13078 | 0.8 | 0.302303 |
Target: 5'- gUCCGCcgGCcCGUCGgcgGGCGGCGGg -3' miRNA: 3'- -AGGCGuaUGaGCAGCagaCUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 127363 | 0.73 | 0.612747 |
Target: 5'- cCCGCGUgGCUaggaUGUCG-UUGGCGGCGGc -3' miRNA: 3'- aGGCGUA-UGA----GCAGCaGACUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 104179 | 0.72 | 0.67376 |
Target: 5'- gCCGCGcGCggGUCGUCgggcggGACGGCGu -3' miRNA: 3'- aGGCGUaUGagCAGCAGa-----CUGCCGCc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 128779 | 0.72 | 0.692913 |
Target: 5'- aCUGCGcGC-CGUUGUCUGggcgcccgggcccGCGGCGGg -3' miRNA: 3'- aGGCGUaUGaGCAGCAGAC-------------UGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 118660 | 0.72 | 0.693917 |
Target: 5'- gCCGCGcGCUCGggG-CUGAgGGCGGc -3' miRNA: 3'- aGGCGUaUGAGCagCaGACUgCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 118077 | 0.72 | 0.703923 |
Target: 5'- gCCGCAgccgcGCUCGUCuG-CUGGCGGCc- -3' miRNA: 3'- aGGCGUa----UGAGCAG-CaGACUGCCGcc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 107346 | 0.71 | 0.713868 |
Target: 5'- cUCCGCGuUGCggaccugCGUCGUC-GugGGCGc -3' miRNA: 3'- -AGGCGU-AUGa------GCAGCAGaCugCCGCc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 93702 | 0.71 | 0.733544 |
Target: 5'- -gCGgGUGCcucuuccuccUCGUCGUCgucGGCGGCGGc -3' miRNA: 3'- agGCgUAUG----------AGCAGCAGa--CUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 87376 | 0.7 | 0.763327 |
Target: 5'- aCCGCGcggcagauguccucgGC-CGUCGUCUcGACGGCGc -3' miRNA: 3'- aGGCGUa--------------UGaGCAGCAGA-CUGCCGCc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 80040 | 0.7 | 0.771778 |
Target: 5'- gCCGUcgccGC-CGUCGccaCUGGCGGCGGg -3' miRNA: 3'- aGGCGua--UGaGCAGCa--GACUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 66023 | 0.7 | 0.790191 |
Target: 5'- aCCGCcgGCgCGUCGUagu-CGGCGGc -3' miRNA: 3'- aGGCGuaUGaGCAGCAgacuGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 41092 | 0.7 | 0.79919 |
Target: 5'- cCCGCcagucgACcgCGUCGUCc-GCGGCGGg -3' miRNA: 3'- aGGCGua----UGa-GCAGCAGacUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 92484 | 0.69 | 0.816731 |
Target: 5'- aCCGCGaGCUCG-CG---GACGGCGGc -3' miRNA: 3'- aGGCGUaUGAGCaGCagaCUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 1081 | 0.69 | 0.822717 |
Target: 5'- cCCGCuccagggcgagcccgGCUCGUCGUCcgagGAC-GCGGa -3' miRNA: 3'- aGGCGua-------------UGAGCAGCAGa---CUGcCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 27434 | 0.69 | 0.841778 |
Target: 5'- -gCGCAUAUUacaaugaGUUUGGCGGCGGg -3' miRNA: 3'- agGCGUAUGAgcag---CAGACUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 2261 | 0.69 | 0.841778 |
Target: 5'- gCCGCcggcGCUCGUCcUCgccgGGCGGCGc -3' miRNA: 3'- aGGCGua--UGAGCAGcAGa---CUGCCGCc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 60033 | 0.69 | 0.84976 |
Target: 5'- cCCGCc-GC-CGUCGgcgCcGACGGCGGc -3' miRNA: 3'- aGGCGuaUGaGCAGCa--GaCUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 93653 | 0.68 | 0.857546 |
Target: 5'- gUCCGCGUACgcccacCGgucCG-CgGGCGGCGGc -3' miRNA: 3'- -AGGCGUAUGa-----GCa--GCaGaCUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 16382 | 0.68 | 0.864381 |
Target: 5'- cUCCGUggGCcucgccgUCGUCGUCgccgGGCGGUGcGg -3' miRNA: 3'- -AGGCGuaUG-------AGCAGCAGa---CUGCCGC-C- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 103492 | 0.68 | 0.86513 |
Target: 5'- -gCGCA-AgaCGUCGUCggcgccgcgGACGGCGGc -3' miRNA: 3'- agGCGUaUgaGCAGCAGa--------CUGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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