miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 3' -55 NC_005261.1 + 118167 0.65 0.95192
Target:  5'- gUCGCGgcgggGCUUGcCGUCUGgGCcGCGGg -3'
miRNA:   3'- aGGCGUa----UGAGCaGCAGAC-UGcCGCC- -5'
23777 3' -55 NC_005261.1 + 92484 0.69 0.816731
Target:  5'- aCCGCGaGCUCG-CG---GACGGCGGc -3'
miRNA:   3'- aGGCGUaUGAGCaGCagaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 1081 0.69 0.822717
Target:  5'- cCCGCuccagggcgagcccgGCUCGUCGUCcgagGAC-GCGGa -3'
miRNA:   3'- aGGCGua-------------UGAGCAGCAGa---CUGcCGCC- -5'
23777 3' -55 NC_005261.1 + 27434 0.69 0.841778
Target:  5'- -gCGCAUAUUacaaugaGUUUGGCGGCGGg -3'
miRNA:   3'- agGCGUAUGAgcag---CAGACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 2261 0.69 0.841778
Target:  5'- gCCGCcggcGCUCGUCcUCgccgGGCGGCGc -3'
miRNA:   3'- aGGCGua--UGAGCAGcAGa---CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 60033 0.69 0.84976
Target:  5'- cCCGCc-GC-CGUCGgcgCcGACGGCGGc -3'
miRNA:   3'- aGGCGuaUGaGCAGCa--GaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 93653 0.68 0.857546
Target:  5'- gUCCGCGUACgcccacCGgucCG-CgGGCGGCGGc -3'
miRNA:   3'- -AGGCGUAUGa-----GCa--GCaGaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 16382 0.68 0.864381
Target:  5'- cUCCGUggGCcucgccgUCGUCGUCgccgGGCGGUGcGg -3'
miRNA:   3'- -AGGCGuaUG-------AGCAGCAGa---CUGCCGC-C- -5'
23777 3' -55 NC_005261.1 + 103492 0.68 0.86513
Target:  5'- -gCGCA-AgaCGUCGUCggcgccgcgGACGGCGGc -3'
miRNA:   3'- agGCGUaUgaGCAGCAGa--------CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 41092 0.7 0.79919
Target:  5'- cCCGCcagucgACcgCGUCGUCc-GCGGCGGg -3'
miRNA:   3'- aGGCGua----UGa-GCAGCAGacUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 66023 0.7 0.790191
Target:  5'- aCCGCcgGCgCGUCGUagu-CGGCGGc -3'
miRNA:   3'- aGGCGuaUGaGCAGCAgacuGCCGCC- -5'
23777 3' -55 NC_005261.1 + 80040 0.7 0.771778
Target:  5'- gCCGUcgccGC-CGUCGccaCUGGCGGCGGg -3'
miRNA:   3'- aGGCGua--UGaGCAGCa--GACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 127363 0.73 0.612747
Target:  5'- cCCGCGUgGCUaggaUGUCG-UUGGCGGCGGc -3'
miRNA:   3'- aGGCGUA-UGA----GCAGCaGACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 104179 0.72 0.67376
Target:  5'- gCCGCGcGCggGUCGUCgggcggGACGGCGu -3'
miRNA:   3'- aGGCGUaUGagCAGCAGa-----CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 128779 0.72 0.692913
Target:  5'- aCUGCGcGC-CGUUGUCUGggcgcccgggcccGCGGCGGg -3'
miRNA:   3'- aGGCGUaUGaGCAGCAGAC-------------UGCCGCC- -5'
23777 3' -55 NC_005261.1 + 118660 0.72 0.693917
Target:  5'- gCCGCGcGCUCGggG-CUGAgGGCGGc -3'
miRNA:   3'- aGGCGUaUGAGCagCaGACUgCCGCC- -5'
23777 3' -55 NC_005261.1 + 118077 0.72 0.703923
Target:  5'- gCCGCAgccgcGCUCGUCuG-CUGGCGGCc- -3'
miRNA:   3'- aGGCGUa----UGAGCAG-CaGACUGCCGcc -5'
23777 3' -55 NC_005261.1 + 107346 0.71 0.713868
Target:  5'- cUCCGCGuUGCggaccugCGUCGUC-GugGGCGc -3'
miRNA:   3'- -AGGCGU-AUGa------GCAGCAGaCugCCGCc -5'
23777 3' -55 NC_005261.1 + 93702 0.71 0.733544
Target:  5'- -gCGgGUGCcucuuccuccUCGUCGUCgucGGCGGCGGc -3'
miRNA:   3'- agGCgUAUG----------AGCAGCAGa--CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 87376 0.7 0.763327
Target:  5'- aCCGCGcggcagauguccucgGC-CGUCGUCUcGACGGCGc -3'
miRNA:   3'- aGGCGUa--------------UGaGCAGCAGA-CUGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.