miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 3' -55 NC_005261.1 + 129 0.68 0.893336
Target:  5'- gCCGCcccugGUGCUCG-CGgggCUGGCagggcuGGCGGa -3'
miRNA:   3'- aGGCG-----UAUGAGCaGCa--GACUG------CCGCC- -5'
23777 3' -55 NC_005261.1 + 1081 0.69 0.822717
Target:  5'- cCCGCuccagggcgagcccgGCUCGUCGUCcgagGAC-GCGGa -3'
miRNA:   3'- aGGCGua-------------UGAGCAGCAGa---CUGcCGCC- -5'
23777 3' -55 NC_005261.1 + 2261 0.69 0.841778
Target:  5'- gCCGCcggcGCUCGUCcUCgccgGGCGGCGc -3'
miRNA:   3'- aGGCGua--UGAGCAGcAGa---CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 2381 0.66 0.928819
Target:  5'- gCCGCAgcggCG-CG-CUGGCGGCGa -3'
miRNA:   3'- aGGCGUaugaGCaGCaGACUGCCGCc -5'
23777 3' -55 NC_005261.1 + 10205 0.66 0.933909
Target:  5'- aCCGCGUGCUCccagggcccgCGcCUGcccaGGCGGg -3'
miRNA:   3'- aGGCGUAUGAGca--------GCaGACug--CCGCC- -5'
23777 3' -55 NC_005261.1 + 10388 0.67 0.917361
Target:  5'- gCCGCGcGCUCGUCGgcuucuuUCUGcuCGGCc- -3'
miRNA:   3'- aGGCGUaUGAGCAGC-------AGACu-GCCGcc -5'
23777 3' -55 NC_005261.1 + 13078 0.8 0.302303
Target:  5'- gUCCGCcgGCcCGUCGgcgGGCGGCGGg -3'
miRNA:   3'- -AGGCGuaUGaGCAGCagaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 13127 0.67 0.923493
Target:  5'- gCCGCGggGCgcgUGUgGUCggUGACGGCGc -3'
miRNA:   3'- aGGCGUa-UGa--GCAgCAG--ACUGCCGCc -5'
23777 3' -55 NC_005261.1 + 14668 0.65 0.95192
Target:  5'- gCCGCGcgcggcguuUAUUCuUCG-CUGAUGGUGGc -3'
miRNA:   3'- aGGCGU---------AUGAGcAGCaGACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 16382 0.68 0.864381
Target:  5'- cUCCGUggGCcucgccgUCGUCGUCgccgGGCGGUGcGg -3'
miRNA:   3'- -AGGCGuaUG-------AGCAGCAGa---CUGCCGC-C- -5'
23777 3' -55 NC_005261.1 + 20541 0.67 0.91793
Target:  5'- aCCGCGcucUGCUgGaCGU--GGCGGCGGg -3'
miRNA:   3'- aGGCGU---AUGAgCaGCAgaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 21221 0.68 0.893336
Target:  5'- gCCGCGacgGCgggccCGUCGgCUGGCGGCu- -3'
miRNA:   3'- aGGCGUa--UGa----GCAGCaGACUGCCGcc -5'
23777 3' -55 NC_005261.1 + 22747 0.65 0.95192
Target:  5'- -gCGCGgggcgGCggCGgcccacgCGUCUGGgGGCGGg -3'
miRNA:   3'- agGCGUa----UGa-GCa------GCAGACUgCCGCC- -5'
23777 3' -55 NC_005261.1 + 24370 0.67 0.906098
Target:  5'- gUCgGCgGUGCUCccggugggcUCGUC-GGCGGCGGg -3'
miRNA:   3'- -AGgCG-UAUGAGc--------AGCAGaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 27434 0.69 0.841778
Target:  5'- -gCGCAUAUUacaaugaGUUUGGCGGCGGg -3'
miRNA:   3'- agGCGUAUGAgcag---CAGACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 32595 0.66 0.931901
Target:  5'- cUCCGCGUccucCUCGUCGUCcgcguccucggacGACGaGcCGGg -3'
miRNA:   3'- -AGGCGUAu---GAGCAGCAGa------------CUGC-C-GCC- -5'
23777 3' -55 NC_005261.1 + 35978 0.65 0.95192
Target:  5'- gCCGCuguaGCggCGgCGgcucCUGGCGGCGGu -3'
miRNA:   3'- aGGCGua--UGa-GCaGCa---GACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 37354 0.66 0.933909
Target:  5'- aUCCGCgggcgGUGCUCGcCGcCcgaGGCGGCGc -3'
miRNA:   3'- -AGGCG-----UAUGAGCaGCaGa--CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 37850 0.65 0.95192
Target:  5'- gCCGCcgACuUCGgCGUCcccgacgccUGGCGGCGc -3'
miRNA:   3'- aGGCGuaUG-AGCaGCAG---------ACUGCCGCc -5'
23777 3' -55 NC_005261.1 + 38885 0.66 0.928819
Target:  5'- aUCGCGUGCacgaagaCGUCGUCcuucuccGGCGcGCGGg -3'
miRNA:   3'- aGGCGUAUGa------GCAGCAGa------CUGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.