miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23780 3' -69.5 NC_005261.1 + 138221 0.71 0.148197
Target:  5'- gACGGCggCUCgGCCgCCGCGcGGUGACa -3'
miRNA:   3'- -UGCCGgaGGGgCGGgGGCGC-CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 138014 0.66 0.318381
Target:  5'- gGCGGCCcgcagCCCgGCgcggCCCgGCGgcgguGGCGGCg -3'
miRNA:   3'- -UGCCGGa----GGGgCG----GGGgCGC-----CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 137779 0.72 0.128504
Target:  5'- gGCGcGCCcccgggCCCCGCCgCCCGCGccGGCGcCg -3'
miRNA:   3'- -UGC-CGGa-----GGGGCGG-GGGCGC--CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 137681 0.66 0.298776
Target:  5'- -gGGCCccCCaCCGCCCCUcgugcaGCGGGCcccGCg -3'
miRNA:   3'- ugCCGGa-GG-GGCGGGGG------CGCCCGc--UG- -5'
23780 3' -69.5 NC_005261.1 + 135325 0.67 0.294969
Target:  5'- gGCGGCCgugcuggacuuuggCCCggagcgguuCGCCCCCGaGGGCcGCc -3'
miRNA:   3'- -UGCCGGa-------------GGG---------GCGGGGGCgCCCGcUG- -5'
23780 3' -69.5 NC_005261.1 + 135226 0.71 0.134784
Target:  5'- cACGGCCgagcgcgucgCCgCCGUCUuuGCGGGCGcGCg -3'
miRNA:   3'- -UGCCGGa---------GG-GGCGGGggCGCCCGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 135115 0.66 0.318381
Target:  5'- gGCGGaCC-CCgCGUCUCCGCaGcGCGGCg -3'
miRNA:   3'- -UGCC-GGaGGgGCGGGGGCGcC-CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 134865 0.75 0.079092
Target:  5'- -aGGCg-CCCgCGCCCCCGCGGGCc-- -3'
miRNA:   3'- ugCCGgaGGG-GCGGGGGCGCCCGcug -5'
23780 3' -69.5 NC_005261.1 + 134749 0.7 0.170601
Target:  5'- gACGGCa--CCCGCgaCCCGCG-GCGGCa -3'
miRNA:   3'- -UGCCGgagGGGCGg-GGGCGCcCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 134459 0.68 0.240206
Target:  5'- -aGGCgCUCUaccuggCCGCCaUCGUGGGCGGCg -3'
miRNA:   3'- ugCCG-GAGG------GGCGGgGGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 134329 0.68 0.234383
Target:  5'- cUGGUCUCgCUgcuguaccgcaaGCCCCCGCgccgccgcgcgggGGGCGGCg -3'
miRNA:   3'- uGCCGGAGgGG------------CGGGGGCG-------------CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 133771 0.7 0.166667
Target:  5'- cCGuGCCUCCaCGCCCUCGUGcGGCG-Ca -3'
miRNA:   3'- uGC-CGGAGGgGCGGGGGCGC-CCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 133116 0.68 0.229708
Target:  5'- cGCGGCCUUCCaCGgcgugcgcgucUCCCUGCGGuGCGcGCu -3'
miRNA:   3'- -UGCCGGAGGG-GC-----------GGGGGCGCC-CGC-UG- -5'
23780 3' -69.5 NC_005261.1 + 132890 0.67 0.292452
Target:  5'- uCGGCaagCCgGgCgCCGCGGGCGGCg -3'
miRNA:   3'- uGCCGgagGGgCgGgGGCGCCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 132701 0.67 0.255009
Target:  5'- gUGGCCgUgCCCGUCCCgGCGcccuaccucauugcGGCGGCc -3'
miRNA:   3'- uGCCGG-AgGGGCGGGGgCGC--------------CCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 132314 0.69 0.209875
Target:  5'- -aGGCg-CCCCauCCCCCGCGGG-GACc -3'
miRNA:   3'- ugCCGgaGGGGc-GGGGGCGCCCgCUG- -5'
23780 3' -69.5 NC_005261.1 + 132076 0.72 0.113971
Target:  5'- cGCGGCCgccgUCgCCGCUgCCGCggaGGGCGGCc -3'
miRNA:   3'- -UGCCGG----AGgGGCGGgGGCG---CCCGCUG- -5'
23780 3' -69.5 NC_005261.1 + 131462 0.68 0.251101
Target:  5'- cGCGGgCgccUCCCGCCUCCGCGaGCG-Cg -3'
miRNA:   3'- -UGCCgGa--GGGGCGGGGGCGCcCGCuG- -5'
23780 3' -69.5 NC_005261.1 + 131407 0.67 0.274109
Target:  5'- cCGaGCC-CCCCGCCgCUGCcGGcaGCGGCg -3'
miRNA:   3'- uGC-CGGaGGGGCGGgGGCG-CC--CGCUG- -5'
23780 3' -69.5 NC_005261.1 + 130197 0.73 0.111255
Target:  5'- gACGGCCaCCaCCGCCuCCUGCaGGCGGa -3'
miRNA:   3'- -UGCCGGaGG-GGCGG-GGGCGcCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.