Results 21 - 40 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 94191 | 0.73 | 0.597709 |
Target: 5'- --cGCGGUG-CGCgGCCAgGAAGUGCc -3' miRNA: 3'- aauCGUCGCaGCGgCGGUgUUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 27578 | 0.73 | 0.608356 |
Target: 5'- -gAGCAcCGUCGCCGCCGacu-GUACc -3' miRNA: 3'- aaUCGUcGCAGCGGCGGUguuuCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 129533 | 0.72 | 0.619022 |
Target: 5'- -aGGCGcGCGggCuaCGCCGCAAGGUGCa -3' miRNA: 3'- aaUCGU-CGCa-GcgGCGGUGUUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 31995 | 0.72 | 0.6297 |
Target: 5'- --cGCGGUGcccgUGCCGCCGCGcGAGUACc -3' miRNA: 3'- aauCGUCGCa---GCGGCGGUGU-UUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 4087 | 0.72 | 0.640379 |
Target: 5'- -cGGCAGCGgCGCCGUCACGcucccGGUGa -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGUu----UCAUg -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 104443 | 0.72 | 0.640379 |
Target: 5'- -gGGCccGCGUCGCCGCCGCcggcgGCg -3' miRNA: 3'- aaUCGu-CGCAGCGGCGGUGuuucaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 53113 | 0.72 | 0.651051 |
Target: 5'- --cGCGGCGcugcgCGCCGCCaACAGGGcgGCg -3' miRNA: 3'- aauCGUCGCa----GCGGCGG-UGUUUCa-UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 107678 | 0.72 | 0.651051 |
Target: 5'- --cGCcgGGCGUUGCCGCCGCGgcGgggGCg -3' miRNA: 3'- aauCG--UCGCAGCGGCGGUGUuuCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 2196 | 0.72 | 0.651051 |
Target: 5'- -cAGCAGCcgGUUGCCcagcGCCGCGAgcaGGUGCg -3' miRNA: 3'- aaUCGUCG--CAGCGG----CGGUGUU---UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 59278 | 0.72 | 0.661707 |
Target: 5'- -cGGC-GUGUCGCCGCCcaGCAGcgcgcAGUGCc -3' miRNA: 3'- aaUCGuCGCAGCGGCGG--UGUU-----UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 95036 | 0.72 | 0.661707 |
Target: 5'- -cGGCGGCGcUCGgCGCCGCAGAccGCc -3' miRNA: 3'- aaUCGUCGC-AGCgGCGGUGUUUcaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 10905 | 0.72 | 0.661707 |
Target: 5'- -cGGCGGCGgcagCGCCGCCGCcGGccGCg -3' miRNA: 3'- aaUCGUCGCa---GCGGCGGUGuUUcaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 13656 | 0.71 | 0.672336 |
Target: 5'- --cGCcGUGcCGCCGCCGCGGGGgggGCg -3' miRNA: 3'- aauCGuCGCaGCGGCGGUGUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 55240 | 0.71 | 0.682931 |
Target: 5'- -cGGCAGCaccgcaGCCGCCGCGAGGa-- -3' miRNA: 3'- aaUCGUCGcag---CGGCGGUGUUUCaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 70502 | 0.71 | 0.682931 |
Target: 5'- gUAGCuGGCGuUCGgCGCCACGGGG-ACg -3' miRNA: 3'- aAUCG-UCGC-AGCgGCGGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 51986 | 0.71 | 0.693479 |
Target: 5'- --cGCGGCGcCGCCGCCGacuuCGAGG-ACg -3' miRNA: 3'- aauCGUCGCaGCGGCGGU----GUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 13113 | 0.71 | 0.693479 |
Target: 5'- -cGGgGGCGUCgGCgGCCGCGGGGcGCg -3' miRNA: 3'- aaUCgUCGCAG-CGgCGGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 58163 | 0.71 | 0.693479 |
Target: 5'- --cGCGcgaGUCGCUGCgCACGAGGUGCa -3' miRNA: 3'- aauCGUcg-CAGCGGCG-GUGUUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 44981 | 0.71 | 0.693479 |
Target: 5'- -gGGCccgGGCGg-GCCGCCACA-GGUGCu -3' miRNA: 3'- aaUCG---UCGCagCGGCGGUGUuUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 104824 | 0.71 | 0.702925 |
Target: 5'- -cAGCGGCGUCGCggggccgCGCCACGcGG-ACc -3' miRNA: 3'- aaUCGUCGCAGCG-------GCGGUGUuUCaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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