miRNA display CGI


Results 1 - 20 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 3' -64.6 NC_005261.1 + 11838 0.66 0.480583
Target:  5'- gGGGCCccGCgGGCGCGcGuUCGc-GAGCGCGa -3'
miRNA:   3'- -CCCGG--CG-CCGCGC-C-GGCuuCUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 51359 0.66 0.489609
Target:  5'- uGGGCUGUccGGCGCggaguacgcgcaGGCCGu---GCGCGa -3'
miRNA:   3'- -CCCGGCG--CCGCG------------CCGGCuucuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 133340 0.66 0.526458
Target:  5'- cGGCaCGCGcGCGCGGCgcugccGCGCAg -3'
miRNA:   3'- cCCG-GCGC-CGCGCCGgcuucuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 26875 0.66 0.489609
Target:  5'- gGGGCgGgGGUG-GGUgGggGGGgGCGg -3'
miRNA:   3'- -CCCGgCgCCGCgCCGgCuuCUCgCGU- -5'
23800 3' -64.6 NC_005261.1 + 42680 0.66 0.480583
Target:  5'- cGGGCCGCcgccggcagccGCGCGGCCGcc-AGCuGCc -3'
miRNA:   3'- -CCCGGCGc----------CGCGCCGGCuucUCG-CGu -5'
23800 3' -64.6 NC_005261.1 + 75385 0.66 0.480583
Target:  5'- -cGCCcUGGCGCGcGCCaucgacGAGGGCGCGg -3'
miRNA:   3'- ccCGGcGCCGCGC-CGGc-----UUCUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 102105 0.66 0.480583
Target:  5'- aGGGCCGaCaGCGCaggGGCCGccaGGGAGaaCGCGu -3'
miRNA:   3'- -CCCGGC-GcCGCG---CCGGC---UUCUC--GCGU- -5'
23800 3' -64.6 NC_005261.1 + 46677 0.66 0.480583
Target:  5'- uGGCCGCGcGCuccacgGCGGCCGccacGGcauucgcuAGCGCGa -3'
miRNA:   3'- cCCGGCGC-CG------CGCCGGCu---UC--------UCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 17167 0.66 0.489609
Target:  5'- --cCCGCGGCGCGGgCGu-GGGCaGCc -3'
miRNA:   3'- cccGGCGCCGCGCCgGCuuCUCG-CGu -5'
23800 3' -64.6 NC_005261.1 + 11432 0.66 0.480583
Target:  5'- cGGGCgGgGgGgGCGGCgGAAGAGgGa- -3'
miRNA:   3'- -CCCGgCgC-CgCGCCGgCUUCUCgCgu -5'
23800 3' -64.6 NC_005261.1 + 134613 0.66 0.480583
Target:  5'- cGGGUcuggugcgaaCGCGGCGuCGGa-GGAGAGCGa- -3'
miRNA:   3'- -CCCG----------GCGCCGC-GCCggCUUCUCGCgu -5'
23800 3' -64.6 NC_005261.1 + 66618 0.66 0.489609
Target:  5'- uGGCgCGCGuGCGCauGGCCGAcGAGaccuGCGu -3'
miRNA:   3'- cCCG-GCGC-CGCG--CCGGCUuCUCg---CGU- -5'
23800 3' -64.6 NC_005261.1 + 54878 0.66 0.479685
Target:  5'- cGGCCggaugaugcgucgGCGcGCGCGuGCCGcAGcGCGCGu -3'
miRNA:   3'- cCCGG-------------CGC-CGCGC-CGGCuUCuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 44306 0.66 0.489609
Target:  5'- aGGGCCGCugcccgcgGGCGCcGCagaCGggGGGCugggGCAc -3'
miRNA:   3'- -CCCGGCG--------CCGCGcCG---GCuuCUCG----CGU- -5'
23800 3' -64.6 NC_005261.1 + 29092 0.66 0.485989
Target:  5'- gGGGCCGgGGacucggggaccgaCGCcgaggggagcccugGcGCCGggGGGCGCc -3'
miRNA:   3'- -CCCGGCgCC-------------GCG--------------C-CGGCuuCUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 84859 0.66 0.489609
Target:  5'- cGGGCC---GCGUGGCCaugaccGAGCGCAc -3'
miRNA:   3'- -CCCGGcgcCGCGCCGGcuu---CUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 59421 0.66 0.480583
Target:  5'- cGGcGCUGUcGCGCGGcCCGGcaGGCGCc -3'
miRNA:   3'- -CC-CGGCGcCGCGCC-GGCUucUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 5270 0.66 0.480583
Target:  5'- cGGGagaCGCcauGGC-CGGCCGcGGuGCGCGc -3'
miRNA:   3'- -CCCg--GCG---CCGcGCCGGCuUCuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 118580 0.66 0.480583
Target:  5'- -cGCgGCGGCGCGcGCCGccgccgcGGAGCucGCGc -3'
miRNA:   3'- ccCGgCGCCGCGC-CGGCu------UCUCG--CGU- -5'
23800 3' -64.6 NC_005261.1 + 93618 0.66 0.480583
Target:  5'- cGGGUCGCGaCGcCGGCCagcagcAGcAGCGCGa -3'
miRNA:   3'- -CCCGGCGCcGC-GCCGGcu----UC-UCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.