miRNA display CGI


Results 1 - 20 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 3' -64.6 NC_005261.1 + 74724 0.85 0.027163
Target:  5'- cGGGCCGCGGCaGCGGCCGcGGAcaaccugcugGCGCGg -3'
miRNA:   3'- -CCCGGCGCCG-CGCCGGCuUCU----------CGCGU- -5'
23800 3' -64.6 NC_005261.1 + 73481 0.84 0.030144
Target:  5'- uGGGCCGCGGCGCGGCgCGcGGA-CGCGg -3'
miRNA:   3'- -CCCGGCGCCGCGCCG-GCuUCUcGCGU- -5'
23800 3' -64.6 NC_005261.1 + 75477 0.84 0.031753
Target:  5'- cGGGCgGCGGCGCgGGCCGcuacGAGCGCGg -3'
miRNA:   3'- -CCCGgCGCCGCG-CCGGCuu--CUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 33792 0.82 0.041901
Target:  5'- uGGGCCccgcgcggGCGGCgggcuugucuuuggGCGGCCGggGGGCGCGg -3'
miRNA:   3'- -CCCGG--------CGCCG--------------CGCCGGCuuCUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 4968 0.82 0.043221
Target:  5'- cGGCCGCGGCGUccucuggGGcCCGGAGGGCGCc -3'
miRNA:   3'- cCCGGCGCCGCG-------CC-GGCUUCUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 32545 0.82 0.04682
Target:  5'- cGGCCGCGGCGCgGGCCGgcGcGCGUg -3'
miRNA:   3'- cCCGGCGCCGCG-CCGGCuuCuCGCGu -5'
23800 3' -64.6 NC_005261.1 + 1407 0.82 0.04682
Target:  5'- cGGCCGCGGCgGCGGCgGggGcGGCGCc -3'
miRNA:   3'- cCCGGCGCCG-CGCCGgCuuC-UCGCGu -5'
23800 3' -64.6 NC_005261.1 + 100698 0.81 0.050582
Target:  5'- cGGCCGCGGCGCGcGCCGcccGAGcCGCGg -3'
miRNA:   3'- cCCGGCGCCGCGC-CGGCuu-CUC-GCGU- -5'
23800 3' -64.6 NC_005261.1 + 98689 0.81 0.051899
Target:  5'- gGGGCCGgaGGCGCGGCCGGAGcuGGgGCc -3'
miRNA:   3'- -CCCGGCg-CCGCGCCGGCUUC--UCgCGu -5'
23800 3' -64.6 NC_005261.1 + 136999 0.81 0.053251
Target:  5'- aGGUCGaucGUGCGGCCGGAGAGCGCGg -3'
miRNA:   3'- cCCGGCgc-CGCGCCGGCUUCUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 105225 0.81 0.053801
Target:  5'- cGGGCCGCGGcCGCGGCCGu-GAucugcggcggcauccGCGCGa -3'
miRNA:   3'- -CCCGGCGCC-GCGCCGGCuuCU---------------CGCGU- -5'
23800 3' -64.6 NC_005261.1 + 46251 0.8 0.058404
Target:  5'- aGGCCGCGGCgGCGGCCGcgaccguguccccGGGGCGCu -3'
miRNA:   3'- cCCGGCGCCG-CGCCGGCu------------UCUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 5507 0.8 0.059005
Target:  5'- gGGGCCGCGGCaGCGGCggCGAGGccgccggcuucGGCGCGc -3'
miRNA:   3'- -CCCGGCGCCG-CGCCG--GCUUC-----------UCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 3372 0.8 0.060536
Target:  5'- aGGGCCGCGaGCGCGGCCGccagccGCGCc -3'
miRNA:   3'- -CCCGGCGC-CGCGCCGGCuucu--CGCGu -5'
23800 3' -64.6 NC_005261.1 + 135086 0.8 0.062104
Target:  5'- cGGGCuCGCGGCcCGGCgGcGGAGCGCGa -3'
miRNA:   3'- -CCCG-GCGCCGcGCCGgCuUCUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 118063 0.8 0.062104
Target:  5'- cGGCCGCGGCaGCGGCCGcAGccGCGCu -3'
miRNA:   3'- cCCGGCGCCG-CGCCGGCuUCu-CGCGu -5'
23800 3' -64.6 NC_005261.1 + 122360 0.8 0.062743
Target:  5'- cGGCCGCGGCucgcgcggccccaccGCGGCCuGGGGGCGCu -3'
miRNA:   3'- cCCGGCGCCG---------------CGCCGGcUUCUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 127758 0.8 0.06536
Target:  5'- cGGGCCGCGGCG-GGCgCGAAGA-CGCc -3'
miRNA:   3'- -CCCGGCGCCGCgCCG-GCUUCUcGCGu -5'
23800 3' -64.6 NC_005261.1 + 68129 0.79 0.06878
Target:  5'- cGGGCCGCGGCGCGG-CGAcc-GCGCc -3'
miRNA:   3'- -CCCGGCGCCGCGCCgGCUucuCGCGu -5'
23800 3' -64.6 NC_005261.1 + 119132 0.79 0.070555
Target:  5'- cGGCCGCGGCGCGGCCaucucGGAuccgcccgcGCGCGa -3'
miRNA:   3'- cCCGGCGCCGCGCCGGcu---UCU---------CGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.