miRNA display CGI


Results 1 - 20 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 3' -64.6 NC_005261.1 + 60 0.73 0.189758
Target:  5'- gGGGCCGaaauCGGCGCGcGCgGGggcGGGGUGCGg -3'
miRNA:   3'- -CCCGGC----GCCGCGC-CGgCU---UCUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 198 0.67 0.454009
Target:  5'- gGGGCCaGCGGUGCcGCCGccGccccuGGUGCu -3'
miRNA:   3'- -CCCGG-CGCCGCGcCGGCuuC-----UCGCGu -5'
23800 3' -64.6 NC_005261.1 + 252 0.71 0.239684
Target:  5'- cGGCUGCGGCgGCGGCUGcGGcGGCGg- -3'
miRNA:   3'- cCCGGCGCCG-CGCCGGCuUC-UCGCgu -5'
23800 3' -64.6 NC_005261.1 + 288 0.71 0.239684
Target:  5'- cGGCUGCGGCgGCGGCUGcGGcGGCGg- -3'
miRNA:   3'- cCCGGCGCCG-CGCCGGCuUC-UCGCgu -5'
23800 3' -64.6 NC_005261.1 + 324 0.73 0.180507
Target:  5'- cGGCUGCGGCgGCGGCUGcGGcggcccgcagcccGGCGCGg -3'
miRNA:   3'- cCCGGCGCCG-CGCCGGCuUC-------------UCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 388 0.67 0.428253
Target:  5'- cGGCgGCGGCgGCGGCgGcGGcAGCGg- -3'
miRNA:   3'- cCCGgCGCCG-CGCCGgCuUC-UCGCgu -5'
23800 3' -64.6 NC_005261.1 + 458 0.73 0.189758
Target:  5'- gGGGCCGCgacGGC-CGGCgGGAuGGCGCGg -3'
miRNA:   3'- -CCCGGCG---CCGcGCCGgCUUcUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 522 0.68 0.371676
Target:  5'- aGGG-CGCGG-GCGGgCGggGGGCaggGCGg -3'
miRNA:   3'- -CCCgGCGCCgCGCCgGCuuCUCG---CGU- -5'
23800 3' -64.6 NC_005261.1 + 631 0.68 0.395295
Target:  5'- gGGGauGUGGCgGCGGCCGcc-AGCGCc -3'
miRNA:   3'- -CCCggCGCCG-CGCCGGCuucUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 979 0.69 0.361744
Target:  5'- cGGGCCGCGcGCagagcggaggagacGgGGgCGggGGGCGgGg -3'
miRNA:   3'- -CCCGGCGC-CG--------------CgCCgGCuuCUCGCgU- -5'
23800 3' -64.6 NC_005261.1 + 1048 0.74 0.156628
Target:  5'- cGGGCgGCGGCguuaGCGGCgCGggGGGCu-- -3'
miRNA:   3'- -CCCGgCGCCG----CGCCG-GCuuCUCGcgu -5'
23800 3' -64.6 NC_005261.1 + 1181 0.78 0.088623
Target:  5'- -cGCCGCGGcCGgGGCCGggGccgGGCGCGg -3'
miRNA:   3'- ccCGGCGCC-GCgCCGGCuuC---UCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 1407 0.82 0.04682
Target:  5'- cGGCCGCGGCgGCGGCgGggGcGGCGCc -3'
miRNA:   3'- cCCGGCGCCG-CGCCGgCuuC-UCGCGu -5'
23800 3' -64.6 NC_005261.1 + 1501 0.68 0.379441
Target:  5'- -cGCCGCGGC-CGGCagcuCGucGGGCGCc -3'
miRNA:   3'- ccCGGCGCCGcGCCG----GCuuCUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 1564 0.68 0.37866
Target:  5'- cGGCCGCagcGGCGC-GCCGAgcccccagcgguuGGcGGCGCGg -3'
miRNA:   3'- cCCGGCG---CCGCGcCGGCU-------------UC-UCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 1731 0.67 0.454009
Target:  5'- cGGGCacCGCGGUGCgcgGGCCcAGGcGCGUg -3'
miRNA:   3'- -CCCG--GCGCCGCG---CCGGcUUCuCGCGu -5'
23800 3' -64.6 NC_005261.1 + 1782 0.66 0.507892
Target:  5'- uGGcGCCGCGGCagagccgcagcgGCGGCgcccCGggGuagagccGCGCGu -3'
miRNA:   3'- -CC-CGGCGCCG------------CGCCG----GCuuCu------CGCGU- -5'
23800 3' -64.6 NC_005261.1 + 1836 0.69 0.332358
Target:  5'- cGGCCuCGGCGCgcgcgaaggcgccgGGcCCGAAGAcGCGCc -3'
miRNA:   3'- cCCGGcGCCGCG--------------CC-GGCUUCU-CGCGu -5'
23800 3' -64.6 NC_005261.1 + 2259 0.69 0.341712
Target:  5'- aGGCCGcCGGCGCucguccucGCCGGGcGGCGCc -3'
miRNA:   3'- cCCGGC-GCCGCGc-------CGGCUUcUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 2369 0.69 0.340986
Target:  5'- aGGCCacgcgccgccgcaGCGGCGCGcuGgCGgcGAGCGCGc -3'
miRNA:   3'- cCCGG-------------CGCCGCGC--CgGCuuCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.