miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 74702 0.66 0.933572
Target:  5'- gGCCGCcGCg--CGGGCGCGGaacCGGg -3'
miRNA:   3'- -CGGUGuCGgaaGCCCGCGCUauuGCU- -5'
23800 5' -55.1 NC_005261.1 + 86237 0.66 0.933572
Target:  5'- uGCCGCAGCCgaugcagcgUCGuGuGCGCGcacGCGu -3'
miRNA:   3'- -CGGUGUCGGa--------AGC-C-CGCGCuauUGCu -5'
23800 5' -55.1 NC_005261.1 + 97132 0.66 0.933572
Target:  5'- cGCCGCGGCCacgcUCGGaG-GCGcUGGCGc -3'
miRNA:   3'- -CGGUGUCGGa---AGCC-CgCGCuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 75973 0.66 0.933572
Target:  5'- -aCGCAGCuCUUccCGGGCGCGGccGCc- -3'
miRNA:   3'- cgGUGUCG-GAA--GCCCGCGCUauUGcu -5'
23800 5' -55.1 NC_005261.1 + 97210 0.66 0.933572
Target:  5'- cGCCGCGGCCacgcUCGGaG-GCGcUGGCGc -3'
miRNA:   3'- -CGGUGUCGGa---AGCC-CgCGCuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 107909 0.66 0.933572
Target:  5'- gGCCGCGGCC-UCGGccacgagugccGCGCGGa----- -3'
miRNA:   3'- -CGGUGUCGGaAGCC-----------CGCGCUauugcu -5'
23800 5' -55.1 NC_005261.1 + 136462 0.66 0.933572
Target:  5'- cGCgGCAGCCccagacUCGcGCGCGGgcagcAGCGAg -3'
miRNA:   3'- -CGgUGUCGGa-----AGCcCGCGCUa----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 30383 0.66 0.933572
Target:  5'- cGCCGCGGCg--CGGGUG-GAgGugGAg -3'
miRNA:   3'- -CGGUGUCGgaaGCCCGCgCUaUugCU- -5'
23800 5' -55.1 NC_005261.1 + 16800 0.66 0.928396
Target:  5'- cGCCAggaAGCCgUCccagaacggGGGCguGCGGUAGCGGc -3'
miRNA:   3'- -CGGUg--UCGGaAG---------CCCG--CGCUAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 58289 0.66 0.928396
Target:  5'- gGCCgGCGcGCCgggGGGCGCGGggagggGGCGGc -3'
miRNA:   3'- -CGG-UGU-CGGaagCCCGCGCUa-----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 83706 0.66 0.928396
Target:  5'- cGCCGCAGCCagCGcaccaugaGCGCGuuuagcuUGACGGc -3'
miRNA:   3'- -CGGUGUCGGaaGCc-------CGCGCu------AUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 14987 0.66 0.928396
Target:  5'- gGCCGCgccGGCCgcgccCGGaGCGCGGgagGAgGAg -3'
miRNA:   3'- -CGGUG---UCGGaa---GCC-CGCGCUa--UUgCU- -5'
23800 5' -55.1 NC_005261.1 + 69794 0.66 0.928396
Target:  5'- cCCGCGGCgcgCGgcGGCGCGAUAAUa- -3'
miRNA:   3'- cGGUGUCGgaaGC--CCGCGCUAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 84001 0.66 0.928396
Target:  5'- cCCGCGGCCcccggCGGGaUGCGcaaaGACGAc -3'
miRNA:   3'- cGGUGUCGGaa---GCCC-GCGCua--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 100240 0.66 0.927865
Target:  5'- cGCCGggcgcacgucugcCAGCCcccagUCGGcGCGCcGGUGGCGc -3'
miRNA:   3'- -CGGU-------------GUCGGa----AGCC-CGCG-CUAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 72126 0.66 0.927865
Target:  5'- gGCCACcccgaagAGCCc-CGGGUGCGAcuGCa- -3'
miRNA:   3'- -CGGUG-------UCGGaaGCCCGCGCUauUGcu -5'
23800 5' -55.1 NC_005261.1 + 41626 0.66 0.926795
Target:  5'- gGCUGCGGCCcUCGGcgaccuugaggugcGCGUGGaGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaAGCC--------------CGCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 103426 0.66 0.922976
Target:  5'- gGCCGCGGCCacgCGcGcGCGCGccucGCGGu -3'
miRNA:   3'- -CGGUGUCGGaa-GC-C-CGCGCuau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 13034 0.66 0.922976
Target:  5'- aCCACgAGCCa--GGGCGCGGggccGCGc -3'
miRNA:   3'- cGGUG-UCGGaagCCCGCGCUau--UGCu -5'
23800 5' -55.1 NC_005261.1 + 103597 0.66 0.922976
Target:  5'- cGCCGCcguGGCCgcggCGGcaGCGCGGgagGCGGc -3'
miRNA:   3'- -CGGUG---UCGGaa--GCC--CGCGCUau-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.