Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 30383 | 0.66 | 0.933572 |
Target: 5'- cGCCGCGGCg--CGGGUG-GAgGugGAg -3' miRNA: 3'- -CGGUGUCGgaaGCCCGCgCUaUugCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 107909 | 0.66 | 0.933572 |
Target: 5'- gGCCGCGGCC-UCGGccacgagugccGCGCGGa----- -3' miRNA: 3'- -CGGUGUCGGaAGCC-----------CGCGCUauugcu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 75973 | 0.66 | 0.933572 |
Target: 5'- -aCGCAGCuCUUccCGGGCGCGGccGCc- -3' miRNA: 3'- cgGUGUCG-GAA--GCCCGCGCUauUGcu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 86237 | 0.66 | 0.933572 |
Target: 5'- uGCCGCAGCCgaugcagcgUCGuGuGCGCGcacGCGu -3' miRNA: 3'- -CGGUGUCGGa--------AGC-C-CGCGCuauUGCu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 74702 | 0.66 | 0.933572 |
Target: 5'- gGCCGCcGCg--CGGGCGCGGaacCGGg -3' miRNA: 3'- -CGGUGuCGgaaGCCCGCGCUauuGCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 97132 | 0.66 | 0.933572 |
Target: 5'- cGCCGCGGCCacgcUCGGaG-GCGcUGGCGc -3' miRNA: 3'- -CGGUGUCGGa---AGCC-CgCGCuAUUGCu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 97210 | 0.66 | 0.933572 |
Target: 5'- cGCCGCGGCCacgcUCGGaG-GCGcUGGCGc -3' miRNA: 3'- -CGGUGUCGGa---AGCC-CgCGCuAUUGCu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 136462 | 0.66 | 0.933572 |
Target: 5'- cGCgGCAGCCccagacUCGcGCGCGGgcagcAGCGAg -3' miRNA: 3'- -CGgUGUCGGa-----AGCcCGCGCUa----UUGCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 84001 | 0.66 | 0.928396 |
Target: 5'- cCCGCGGCCcccggCGGGaUGCGcaaaGACGAc -3' miRNA: 3'- cGGUGUCGGaa---GCCC-GCGCua--UUGCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 83706 | 0.66 | 0.928396 |
Target: 5'- cGCCGCAGCCagCGcaccaugaGCGCGuuuagcuUGACGGc -3' miRNA: 3'- -CGGUGUCGGaaGCc-------CGCGCu------AUUGCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 14987 | 0.66 | 0.928396 |
Target: 5'- gGCCGCgccGGCCgcgccCGGaGCGCGGgagGAgGAg -3' miRNA: 3'- -CGGUG---UCGGaa---GCC-CGCGCUa--UUgCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 16800 | 0.66 | 0.928396 |
Target: 5'- cGCCAggaAGCCgUCccagaacggGGGCguGCGGUAGCGGc -3' miRNA: 3'- -CGGUg--UCGGaAG---------CCCG--CGCUAUUGCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 69794 | 0.66 | 0.928396 |
Target: 5'- cCCGCGGCgcgCGgcGGCGCGAUAAUa- -3' miRNA: 3'- cGGUGUCGgaaGC--CCGCGCUAUUGcu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 58289 | 0.66 | 0.928396 |
Target: 5'- gGCCgGCGcGCCgggGGGCGCGGggagggGGCGGc -3' miRNA: 3'- -CGG-UGU-CGGaagCCCGCGCUa-----UUGCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 72126 | 0.66 | 0.927865 |
Target: 5'- gGCCACcccgaagAGCCc-CGGGUGCGAcuGCa- -3' miRNA: 3'- -CGGUG-------UCGGaaGCCCGCGCUauUGcu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 100240 | 0.66 | 0.927865 |
Target: 5'- cGCCGggcgcacgucugcCAGCCcccagUCGGcGCGCcGGUGGCGc -3' miRNA: 3'- -CGGU-------------GUCGGa----AGCC-CGCG-CUAUUGCu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 41626 | 0.66 | 0.926795 |
Target: 5'- gGCUGCGGCCcUCGGcgaccuugaggugcGCGUGGaGGCGGc -3' miRNA: 3'- -CGGUGUCGGaAGCC--------------CGCGCUaUUGCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 13034 | 0.66 | 0.922976 |
Target: 5'- aCCACgAGCCa--GGGCGCGGggccGCGc -3' miRNA: 3'- cGGUG-UCGGaagCCCGCGCUau--UGCu -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 103426 | 0.66 | 0.922976 |
Target: 5'- gGCCGCGGCCacgCGcGcGCGCGccucGCGGu -3' miRNA: 3'- -CGGUGUCGGaa-GC-C-CGCGCuau-UGCU- -5' |
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23800 | 5' | -55.1 | NC_005261.1 | + | 103597 | 0.66 | 0.922976 |
Target: 5'- cGCCGCcguGGCCgcggCGGcaGCGCGGgagGCGGc -3' miRNA: 3'- -CGGUG---UCGGaa--GCC--CGCGCUau-UGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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