Results 1 - 20 of 195 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 71612 | 0.82 | 0.195056 |
Target: 5'- cGCCGCGGCC--CGGGCGCGGgcccgGGCGGc -3' miRNA: 3'- -CGGUGUCGGaaGCCCGCGCUa----UUGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 92617 | 0.8 | 0.268385 |
Target: 5'- uGCCGgGGCCc-CGGGCGCGAgAGCGGg -3' miRNA: 3'- -CGGUgUCGGaaGCCCGCGCUaUUGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 4852 | 0.78 | 0.323723 |
Target: 5'- cGCCGCAGCCUcaaGGGCgGCGGccACGAc -3' miRNA: 3'- -CGGUGUCGGAag-CCCG-CGCUauUGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 14362 | 0.77 | 0.387128 |
Target: 5'- aGCCGCGGCCgggGcGGCGCGGUGGCc- -3' miRNA: 3'- -CGGUGUCGGaagC-CCGCGCUAUUGcu -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 108186 | 0.76 | 0.395608 |
Target: 5'- gGCCGCGGCUc-CGGGCGCGAgAGCu- -3' miRNA: 3'- -CGGUGUCGGaaGCCCGCGCUaUUGcu -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 1181 | 0.76 | 0.402477 |
Target: 5'- cGCCGCGGCCggggccggggcCGGGCGCGGc-GCGGa -3' miRNA: 3'- -CGGUGUCGGaa---------GCCCGCGCUauUGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 81195 | 0.76 | 0.404206 |
Target: 5'- gGgCACGGCCgcgCGGGCGCGAgc-CGGa -3' miRNA: 3'- -CgGUGUCGGaa-GCCCGCGCUauuGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 135241 | 0.76 | 0.421754 |
Target: 5'- cGCCGCcGUCUuugCGGGCGCGcgGAUGGa -3' miRNA: 3'- -CGGUGuCGGAa--GCCCGCGCuaUUGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 28218 | 0.76 | 0.428003 |
Target: 5'- uGCCGCGGCCccagcuaccccccggCGcGCGCGAUAGCGGg -3' miRNA: 3'- -CGGUGUCGGaa-------------GCcCGCGCUAUUGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 68981 | 0.75 | 0.467547 |
Target: 5'- aCCGCGGCCcuuUUCGGGCcGCGcgGGCGc -3' miRNA: 3'- cGGUGUCGG---AAGCCCG-CGCuaUUGCu -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 96964 | 0.75 | 0.477012 |
Target: 5'- --gGCAGCCgcCGGGCGCGAUucacGCGGc -3' miRNA: 3'- cggUGUCGGaaGCCCGCGCUAu---UGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 70558 | 0.75 | 0.477012 |
Target: 5'- cGCCGCAgggcGCCgcgaagagcUCGGGCGCGAgcgcAGCGGc -3' miRNA: 3'- -CGGUGU----CGGa--------AGCCCGCGCUa---UUGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 89090 | 0.75 | 0.477012 |
Target: 5'- gGCUGCGGCC--CGGGCGCGcUGGCGc -3' miRNA: 3'- -CGGUGUCGGaaGCCCGCGCuAUUGCu -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 119879 | 0.75 | 0.486571 |
Target: 5'- cGCCGCAGCCga-GGGCGUGuacaccUGGCGc -3' miRNA: 3'- -CGGUGUCGGaagCCCGCGCu-----AUUGCu -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 35930 | 0.74 | 0.49622 |
Target: 5'- cGCCGCAGCCcagCGGGCGCccaggccCGAg -3' miRNA: 3'- -CGGUGUCGGaa-GCCCGCGcuauu--GCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 93828 | 0.74 | 0.49622 |
Target: 5'- cGCCGCAGCCgcCGGGCgGCGccgcCGAg -3' miRNA: 3'- -CGGUGUCGGaaGCCCG-CGCuauuGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 43143 | 0.74 | 0.503025 |
Target: 5'- cGCgCGCGGCCUgcgcgccgccgacaUCGcGGCGCGAUAcggcgccgccgGCGAg -3' miRNA: 3'- -CG-GUGUCGGA--------------AGC-CCGCGCUAU-----------UGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 111420 | 0.74 | 0.505954 |
Target: 5'- gGCCACAcGCCggCGGGCaaGAgacgGACGAc -3' miRNA: 3'- -CGGUGU-CGGaaGCCCGcgCUa---UUGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 48699 | 0.74 | 0.515769 |
Target: 5'- gGCCAuCAcGCCggCGGGCGUGAUGuugcaACGGg -3' miRNA: 3'- -CGGU-GU-CGGaaGCCCGCGCUAU-----UGCU- -5' |
|||||||
23800 | 5' | -55.1 | NC_005261.1 | + | 126944 | 0.74 | 0.535622 |
Target: 5'- gGCCAgGGgCgcCGGGCGCGggGGCGGc -3' miRNA: 3'- -CGGUgUCgGaaGCCCGCGCuaUUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home