miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 348 0.7 0.719485
Target:  5'- cCCGCAGCCcggCGcGGCccggcgGCGGUGGCGGc -3'
miRNA:   3'- cGGUGUCGGaa-GC-CCG------CGCUAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 463 0.68 0.863507
Target:  5'- cGCgACGGCCggCGggauGGCGCGggGAgGAg -3'
miRNA:   3'- -CGgUGUCGGaaGC----CCGCGCuaUUgCU- -5'
23800 5' -55.1 NC_005261.1 + 1181 0.76 0.402477
Target:  5'- cGCCGCGGCCggggccggggcCGGGCGCGGc-GCGGa -3'
miRNA:   3'- -CGGUGUCGGaa---------GCCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 1402 0.7 0.719485
Target:  5'- cGCCGCGGCCgcggCGGcG-GCGggGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaa--GCC-CgCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 1501 0.72 0.637792
Target:  5'- cGCCGCGGCCggcagcucgUCGGGCGCcagcuccAGCGc -3'
miRNA:   3'- -CGGUGUCGGa--------AGCCCGCGcua----UUGCu -5'
23800 5' -55.1 NC_005261.1 + 2370 0.68 0.822855
Target:  5'- gGCCACGcGCCgccgcaGcGGCGCGcUGGCGGc -3'
miRNA:   3'- -CGGUGU-CGGaag---C-CCGCGCuAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 2550 0.7 0.719485
Target:  5'- cGCCGCGGCgCU--GGGCGCGG--GCGu -3'
miRNA:   3'- -CGGUGUCG-GAagCCCGCGCUauUGCu -5'
23800 5' -55.1 NC_005261.1 + 3344 0.74 0.539626
Target:  5'- cGCCGCggcgcccggcgcgccGGCCUUCaGGGCcGCGAgcGCGGc -3'
miRNA:   3'- -CGGUG---------------UCGGAAG-CCCG-CGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 3545 0.68 0.863507
Target:  5'- gGCgCGCAGCgCggCGGGCGCGGc----- -3'
miRNA:   3'- -CG-GUGUCG-GaaGCCCGCGCUauugcu -5'
23800 5' -55.1 NC_005261.1 + 3827 0.68 0.822855
Target:  5'- uGCCGCgGGCC--CGGGCGC--UGGCGGc -3'
miRNA:   3'- -CGGUG-UCGGaaGCCCGCGcuAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 4513 0.67 0.892261
Target:  5'- aGUCGCGcGCCcgcgCGGGCGCcgcGGCGAg -3'
miRNA:   3'- -CGGUGU-CGGaa--GCCCGCGcuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 4852 0.78 0.323723
Target:  5'- cGCCGCAGCCUcaaGGGCgGCGGccACGAc -3'
miRNA:   3'- -CGGUGUCGGAag-CCCG-CGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 5104 0.66 0.922976
Target:  5'- cGCCACAGCUccgccagcUC-GGCGCGG--GCGGc -3'
miRNA:   3'- -CGGUGUCGGa-------AGcCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 5151 0.66 0.905264
Target:  5'- cGCCuCGGCCcggCGGGcCGCGu---CGAg -3'
miRNA:   3'- -CGGuGUCGGaa-GCCC-GCGCuauuGCU- -5'
23800 5' -55.1 NC_005261.1 + 5277 0.67 0.892261
Target:  5'- cGCCAUGGCCggcCGcGGUGCGc--GCGGg -3'
miRNA:   3'- -CGGUGUCGGaa-GC-CCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 5529 0.67 0.892261
Target:  5'- gGCCGCcGgCUUCGGcGCGC---AGCGAg -3'
miRNA:   3'- -CGGUGuCgGAAGCC-CGCGcuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 11219 0.67 0.876888
Target:  5'- cGCCGCguGGCCccccgCGGGCGCGcuuccuccuCGAu -3'
miRNA:   3'- -CGGUG--UCGGaa---GCCCGCGCuauu-----GCU- -5'
23800 5' -55.1 NC_005261.1 + 11834 0.68 0.847836
Target:  5'- gGCgGgGGCCccgCGGGCGCGcguucGCGAg -3'
miRNA:   3'- -CGgUgUCGGaa-GCCCGCGCuau--UGCU- -5'
23800 5' -55.1 NC_005261.1 + 12301 0.7 0.739331
Target:  5'- cGCCGCGGgCa-CGGGCGCGuagccGGCGGg -3'
miRNA:   3'- -CGGUGUCgGaaGCCCGCGCua---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 12709 0.68 0.831369
Target:  5'- aGCCcgaGCGGC--UCGGGCGCGcgGGCc- -3'
miRNA:   3'- -CGG---UGUCGgaAGCCCGCGCuaUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.