Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23801 | 5' | -57.5 | NC_005261.1 | + | 125723 | 0.66 | 0.820853 |
Target: 5'- -gCGGGCucggcuggGGCCGccgCAAGGGGgCcgGGg -3' miRNA: 3'- aaGCCCG--------CCGGCa--GUUCCUCaGuaCC- -5' |
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23801 | 5' | -57.5 | NC_005261.1 | + | 48309 | 0.66 | 0.820853 |
Target: 5'- cUCGGGgGGCgCGUCGGGcccGGGcUCggGGg -3' miRNA: 3'- aAGCCCgCCG-GCAGUUC---CUC-AGuaCC- -5' |
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23801 | 5' | -57.5 | NC_005261.1 | + | 24181 | 0.66 | 0.837595 |
Target: 5'- -cCGGGgGGUCGUCGgcgaggcuccAGGAucGUCGgcgGGg -3' miRNA: 3'- aaGCCCgCCGGCAGU----------UCCU--CAGUa--CC- -5' |
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23801 | 5' | -57.5 | NC_005261.1 | + | 121777 | 0.66 | 0.840857 |
Target: 5'- gUgGGGUGGCCG-CGgccggcgggcugggcAGGGGgcgCGUGGc -3' miRNA: 3'- aAgCCCGCCGGCaGU---------------UCCUCa--GUACC- -5' |
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23801 | 5' | -57.5 | NC_005261.1 | + | 110241 | 0.66 | 0.844891 |
Target: 5'- -gUGGGCGGCgCGgcgccCGGGGGGcugcgggccucccUCGUGGc -3' miRNA: 3'- aaGCCCGCCG-GCa----GUUCCUC-------------AGUACC- -5' |
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23801 | 5' | -57.5 | NC_005261.1 | + | 132019 | 0.66 | 0.845692 |
Target: 5'- -cUGGGCcGCCGUCAcGGA--CGUGGc -3' miRNA: 3'- aaGCCCGcCGGCAGUuCCUcaGUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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