miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 16394 0.65 0.622948
Target:  5'- cGCCGUCGUCGUcGCCGggcggugcgggagagGCCCCCUc -3'
miRNA:   3'- cUGGCGGCAGCAcUGGUgg-------------CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 51313 0.66 0.587157
Target:  5'- cGCaCGCCGgCGccGCCGCCGCCUUCg -3'
miRNA:   3'- cUG-GCGGCaGCacUGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 95 0.66 0.596804
Target:  5'- gGGCgCGCCccCG-GGCC-CCGCCgCCCg -3'
miRNA:   3'- -CUG-GCGGcaGCaCUGGuGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 128714 0.66 0.57754
Target:  5'- aGGCgCGCC--CG-GGCC-CCGCCCgCCCg -3'
miRNA:   3'- -CUG-GCGGcaGCaCUGGuGGCGGG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 97797 0.66 0.567958
Target:  5'- gGGCCGgcgaCCGUCc--GCCGgCGCCCCCg -3'
miRNA:   3'- -CUGGC----GGCAGcacUGGUgGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 68644 0.66 0.567958
Target:  5'- cGACCGagguCaUCGUcACCGCCGCCCgCgCCg -3'
miRNA:   3'- -CUGGCg---GcAGCAcUGGUGGCGGG-G-GG- -5'
23803 5' -63.2 NC_005261.1 + 135577 0.66 0.567958
Target:  5'- gGACC-CCaUCGUGGCCACgGCCggCgCCg -3'
miRNA:   3'- -CUGGcGGcAGCACUGGUGgCGG--GgGG- -5'
23803 5' -63.2 NC_005261.1 + 130736 0.66 0.57754
Target:  5'- uGCCGCCGaCaUGAUCGCCGCgCUgCu -3'
miRNA:   3'- cUGGCGGCaGcACUGGUGGCGgGGgG- -5'
23803 5' -63.2 NC_005261.1 + 132106 0.66 0.571786
Target:  5'- cGGCCGCgacgCGcUCGUGGagcgggacgcgcggcUgACCGCCCUCCu -3'
miRNA:   3'- -CUGGCG----GC-AGCACU---------------GgUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 103883 0.66 0.583307
Target:  5'- cGCCGCCGggCGgcgcgccaagccgGGCCACCcGCgCCgCCa -3'
miRNA:   3'- cUGGCGGCa-GCa------------CUGGUGG-CGgGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 116924 0.66 0.587157
Target:  5'- aGCCGCCG-CG-GGCUGCuggaCGCCUUCCg -3'
miRNA:   3'- cUGGCGGCaGCaCUGGUG----GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 46513 0.66 0.57754
Target:  5'- -cCCGgCGUCGcGcAgCACCGCCUCCg -3'
miRNA:   3'- cuGGCgGCAGCaC-UgGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 84368 0.66 0.587157
Target:  5'- cGCCGCCcgcgggcUCGgccucGGCCGCCGCCUCg- -3'
miRNA:   3'- cUGGCGGc------AGCa----CUGGUGGCGGGGgg -5'
23803 5' -63.2 NC_005261.1 + 137882 0.66 0.567958
Target:  5'- gGGCCaGCgGU----GCCGCCGCCgCCCCu -3'
miRNA:   3'- -CUGG-CGgCAgcacUGGUGGCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 94417 0.66 0.587157
Target:  5'- gGGCgCGaCGUcCGcGG-CGCCGCCCCCCu -3'
miRNA:   3'- -CUG-GCgGCA-GCaCUgGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 86619 0.66 0.567958
Target:  5'- cGCCGCCGUCGU--CCACC-UCCgUCa -3'
miRNA:   3'- cUGGCGGCAGCAcuGGUGGcGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 35570 0.66 0.587157
Target:  5'- aGCCGCCG-CGcuauccuCCAUCGCCcggaCCCCa -3'
miRNA:   3'- cUGGCGGCaGCacu----GGUGGCGG----GGGG- -5'
23803 5' -63.2 NC_005261.1 + 28875 0.66 0.57754
Target:  5'- aGGCUGCgGcgCGgacGCCGCCGCCUgcgCCCa -3'
miRNA:   3'- -CUGGCGgCa-GCac-UGGUGGCGGG---GGG- -5'
23803 5' -63.2 NC_005261.1 + 5165 0.66 0.587157
Target:  5'- gGGCCG-CGUCGagcagGGCCGgguccuccuCCggGCCCCCCu -3'
miRNA:   3'- -CUGGCgGCAGCa----CUGGU---------GG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 97509 0.66 0.567958
Target:  5'- gGGCCGCCGgaaCGUuucGGCuCGCCGCgaucggcggCCCCg -3'
miRNA:   3'- -CUGGCGGCa--GCA---CUG-GUGGCG---------GGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.