miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 95 0.66 0.596804
Target:  5'- gGGCgCGCCccCG-GGCC-CCGCCgCCCg -3'
miRNA:   3'- -CUG-GCGGcaGCaCUGGuGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 199 0.66 0.567958
Target:  5'- gGGCCaGCgGU----GCCGCCGCCgCCCCu -3'
miRNA:   3'- -CUGG-CGgCAgcacUGGUGGCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 560 0.69 0.406695
Target:  5'- cGGCCGCCGcgCgGUGACacuacgcuCCuCCCCCCu -3'
miRNA:   3'- -CUGGCGGCa-G-CACUGgu------GGcGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 786 0.72 0.283531
Target:  5'- -cCCGCCcccccccCGc-GCCGCCGCCCCCCa -3'
miRNA:   3'- cuGGCGGca-----GCacUGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 1228 0.67 0.548921
Target:  5'- uGCCGCCGUCGccGGCC-CCgggaaGCCCgaguccgugCCCg -3'
miRNA:   3'- cUGGCGGCAGCa-CUGGuGG-----CGGG---------GGG- -5'
23803 5' -63.2 NC_005261.1 + 1335 0.67 0.520758
Target:  5'- cGCCGCCGcgccgCGccUGcACCAgCGUCUCCCg -3'
miRNA:   3'- cUGGCGGCa----GC--AC-UGGUgGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 1601 0.68 0.5023
Target:  5'- --gCGCgGUgGcUGGCCGCCucGCCCUCCg -3'
miRNA:   3'- cugGCGgCAgC-ACUGGUGG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 2259 0.68 0.463639
Target:  5'- aGGCCGCCGgcgcUCGUccucgccgggcggcGccGCCAgCGCCuCCCCg -3'
miRNA:   3'- -CUGGCGGC----AGCA--------------C--UGGUgGCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 2603 0.69 0.423237
Target:  5'- aGCCGCCGUCGgcggcggGGCCGCCgggcggcaugggGCCCa-- -3'
miRNA:   3'- cUGGCGGCAGCa------CUGGUGG------------CGGGggg -5'
23803 5' -63.2 NC_005261.1 + 2755 0.72 0.277286
Target:  5'- gGGCCGUCG-CGgcgGGCCucgaggcCCGCCCCCg -3'
miRNA:   3'- -CUGGCGGCaGCa--CUGGu------GGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 3517 0.66 0.606474
Target:  5'- cGGCCGCCuccagCGcGGCgGCCGCCUCg- -3'
miRNA:   3'- -CUGGCGGca---GCaCUGgUGGCGGGGgg -5'
23803 5' -63.2 NC_005261.1 + 3670 0.69 0.440175
Target:  5'- aGGCCGCgGcCGgcaGGCCGCgGCCCgCUg -3'
miRNA:   3'- -CUGGCGgCaGCa--CUGGUGgCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 4308 0.69 0.414915
Target:  5'- cGGCCGCCG-CGUaGCgCGCgGCCgCCUCg -3'
miRNA:   3'- -CUGGCGGCaGCAcUG-GUGgCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 4896 0.67 0.530087
Target:  5'- cGGCCGCC-UCGgcuucggcGGCgGCUGCCUCCg -3'
miRNA:   3'- -CUGGCGGcAGCa-------CUGgUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 5052 0.69 0.418232
Target:  5'- -cUCGUCGUCGUcGGCC-CCGCcggccucgucacucuCCCCCg -3'
miRNA:   3'- cuGGCGGCAGCA-CUGGuGGCG---------------GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 5165 0.66 0.587157
Target:  5'- gGGCCG-CGUCGagcagGGCCGgguccuccuCCggGCCCCCCu -3'
miRNA:   3'- -CUGGCgGCAGCa----CUGGU---------GG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 5434 0.69 0.414915
Target:  5'- cGACCGCgGcCGcGGCgGCggcaacagCGCCCCCCc -3'
miRNA:   3'- -CUGGCGgCaGCaCUGgUG--------GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 6868 0.74 0.225954
Target:  5'- cGCUcCCGUUuUGACCgcccACCGCCCCCCu -3'
miRNA:   3'- cUGGcGGCAGcACUGG----UGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 7454 0.72 0.271151
Target:  5'- -uCCGCCaUUGUuGCCGCCcCCCCCCa -3'
miRNA:   3'- cuGGCGGcAGCAcUGGUGGcGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 7480 0.73 0.242107
Target:  5'- -uCCGCgGUCuuaucACCGCUGCCCCCCu -3'
miRNA:   3'- cuGGCGgCAGcac--UGGUGGCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.