miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 106226 0.77 0.14027
Target:  5'- cGGCCGCCuggCGcGGCCGCCGCgCCCUa -3'
miRNA:   3'- -CUGGCGGca-GCaCUGGUGGCGgGGGG- -5'
23803 5' -63.2 NC_005261.1 + 16394 0.65 0.622948
Target:  5'- cGCCGUCGUCGUcGCCGggcggugcgggagagGCCCCCUc -3'
miRNA:   3'- cUGGCGGCAGCAcUGGUgg-------------CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 132021 0.75 0.178602
Target:  5'- gGGCCGCCGUcacggaCGUGGCCGCC-CUggaCCCCg -3'
miRNA:   3'- -CUGGCGGCA------GCACUGGUGGcGG---GGGG- -5'
23803 5' -63.2 NC_005261.1 + 77557 0.75 0.178602
Target:  5'- cGCCGCCGcCaGUGgcGCCGCCGCgCCCUg -3'
miRNA:   3'- cUGGCGGCaG-CAC--UGGUGGCGgGGGG- -5'
23803 5' -63.2 NC_005261.1 + 83014 0.75 0.170257
Target:  5'- aGCCGCCGUC---GCCGgCGCCCCCg -3'
miRNA:   3'- cUGGCGGCAGcacUGGUgGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 46966 0.75 0.170257
Target:  5'- --gCGCCGUCGccgcuGCCGCCGCCCgCCg -3'
miRNA:   3'- cugGCGGCAGCac---UGGUGGCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 115905 0.76 0.165817
Target:  5'- -cCCGCCGUCGUcagcgccGGCCGCCGCgUCCg -3'
miRNA:   3'- cuGGCGGCAGCA-------CUGGUGGCGgGGGg -5'
23803 5' -63.2 NC_005261.1 + 51280 0.76 0.162262
Target:  5'- aGAUCGCCGUCcUGGCCGCgGCCaCCUa -3'
miRNA:   3'- -CUGGCGGCAGcACUGGUGgCGG-GGGg -5'
23803 5' -63.2 NC_005261.1 + 67311 0.76 0.150902
Target:  5'- cGCCGCCGUCGgccGCCGCCGCgCUCa -3'
miRNA:   3'- cUGGCGGCAGCac-UGGUGGCGgGGGg -5'
23803 5' -63.2 NC_005261.1 + 33335 0.76 0.147279
Target:  5'- cGCCGCCGcCGccGCCACCGCCgCCaCCg -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGG-GG-GG- -5'
23803 5' -63.2 NC_005261.1 + 33260 0.77 0.143735
Target:  5'- cGCCgGCCGUCGcGGCCcCCGUCCCCg -3'
miRNA:   3'- cUGG-CGGCAGCaCUGGuGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 28848 0.9 0.01769
Target:  5'- aGGCgGCCGUCGUGGCCGCCGCCCUUg -3'
miRNA:   3'- -CUGgCGGCAGCACUGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 77820 0.77 0.133568
Target:  5'- aGCUGCCGcCccaGcACCACCGCCCCCCu -3'
miRNA:   3'- cUGGCGGCaGca-C-UGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 91485 0.77 0.127161
Target:  5'- --gCGCCGcCGcGGCCGCCGCCCgCCCc -3'
miRNA:   3'- cugGCGGCaGCaCUGGUGGCGGG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 82681 0.78 0.124066
Target:  5'- aGCCGCuCGUCGggcGCCACCGCCgcgcuCCCCa -3'
miRNA:   3'- cUGGCG-GCAGCac-UGGUGGCGG-----GGGG- -5'
23803 5' -63.2 NC_005261.1 + 33953 0.78 0.123151
Target:  5'- cGCCGCCuGUCGcUGgaccuucugccgccGCCGCCGCCgCCCCg -3'
miRNA:   3'- cUGGCGG-CAGC-AC--------------UGGUGGCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 85012 0.78 0.121041
Target:  5'- cGGCCGCgGggucgCGcGGCCGCCGCgCCCCg -3'
miRNA:   3'- -CUGGCGgCa----GCaCUGGUGGCGgGGGG- -5'
23803 5' -63.2 NC_005261.1 + 73032 0.78 0.118084
Target:  5'- -cCCaGCCGUCGc-GCCACgCGCCCCCCg -3'
miRNA:   3'- cuGG-CGGCAGCacUGGUG-GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 33177 0.78 0.112371
Target:  5'- aGCCGCCGUCc--GCC-CUGCCCCCCg -3'
miRNA:   3'- cUGGCGGCAGcacUGGuGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 77701 0.78 0.106918
Target:  5'- cGACgGCCcccucGACCGCCGCCCCCCa -3'
miRNA:   3'- -CUGgCGGcagcaCUGGUGGCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.