miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 9287 0.67 0.533836
Target:  5'- cAUCGCCG-CG-GACCGCaaccgaggauccgaGCCCCCa -3'
miRNA:   3'- cUGGCGGCaGCaCUGGUGg-------------CGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 9333 0.67 0.520758
Target:  5'- cGCCGCCGaCGagcccaccggGAgCACCGCCgacgauCCCCg -3'
miRNA:   3'- cUGGCGGCaGCa---------CUgGUGGCGG------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 9570 0.67 0.539476
Target:  5'- -cCCGCCag-GUGAgCC-CCGCCCaCCCa -3'
miRNA:   3'- cuGGCGGcagCACU-GGuGGCGGG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 10134 0.67 0.538535
Target:  5'- cACCGCCGcCaUGAgCCACgGCCagcccugCCCCa -3'
miRNA:   3'- cUGGCGGCaGcACU-GGUGgCGG-------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 10511 0.67 0.547974
Target:  5'- cGGCCGCCGcugCG-GGCCccgcggcgcgcucGCUGUcgCCCCCg -3'
miRNA:   3'- -CUGGCGGCa--GCaCUGG-------------UGGCG--GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 10680 0.72 0.276667
Target:  5'- uGCCGCCGUCcccucccggcaaaGgcguucgcgGGCCGCCuccggGCCCCCCu -3'
miRNA:   3'- cUGGCGGCAG-------------Ca--------CUGGUGG-----CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 11017 0.71 0.302932
Target:  5'- cGACgGCC-UCGUcGCCGggcCCGUCCCCCg -3'
miRNA:   3'- -CUGgCGGcAGCAcUGGU---GGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 11118 0.68 0.484133
Target:  5'- aGAUgCGCCGgcagCGUGcgccgccuCCGCCGCUCUCCc -3'
miRNA:   3'- -CUG-GCGGCa---GCACu-------GGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 12137 0.68 0.493178
Target:  5'- -cCCGCCGcCGcGGCgGCCGCgcaggCCCCa -3'
miRNA:   3'- cuGGCGGCaGCaCUGgUGGCGg----GGGG- -5'
23803 5' -63.2 NC_005261.1 + 12203 0.74 0.20107
Target:  5'- cGCCGCCGcCGguGCCGCCGCCgcugcugccgCCCCa -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGG----------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 12480 0.67 0.520758
Target:  5'- uGACgaCGCUGU-GUGGacucuCCAUgGCCCCCCg -3'
miRNA:   3'- -CUG--GCGGCAgCACU-----GGUGgCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 12798 0.69 0.423237
Target:  5'- aGCuCGUCGUCGgcgucGCUGCCGUCCUCCg -3'
miRNA:   3'- cUG-GCGGCAGCac---UGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 13872 0.67 0.535713
Target:  5'- cGGCgGCCcgGUCGUacaggaaguacacGCCGCCGUCCUCCu -3'
miRNA:   3'- -CUGgCGG--CAGCAc------------UGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 15123 0.68 0.493178
Target:  5'- uGAuCCGgCGUCGcGACUccuUCGCCCCCg -3'
miRNA:   3'- -CU-GGCgGCAGCaCUGGu--GGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 15738 0.67 0.511495
Target:  5'- gGGCCGuCCGcgCGcaGGCCgACCGCCUCgCCg -3'
miRNA:   3'- -CUGGC-GGCa-GCa-CUGG-UGGCGGGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 15794 0.67 0.558417
Target:  5'- cGCCGcCCG-CGcGGCCagcGCCGCCaCCCa -3'
miRNA:   3'- cUGGC-GGCaGCaCUGG---UGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 16294 0.69 0.431657
Target:  5'- gGGgCGCCGUCG-GGCCcagcggcgGCCggGCCCUCCc -3'
miRNA:   3'- -CUgGCGGCAGCaCUGG--------UGG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 16394 0.65 0.622948
Target:  5'- cGCCGUCGUCGUcGCCGggcggugcgggagagGCCCCCUc -3'
miRNA:   3'- cUGGCGGCAGCAcUGGUgg-------------CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 19771 0.67 0.539476
Target:  5'- gGGCC-CCGUCGccucGAacaCGCgGCCCUCCg -3'
miRNA:   3'- -CUGGcGGCAGCa---CUg--GUGgCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 19903 0.68 0.466287
Target:  5'- -gUCGCCGUCGUcGCUcUCGCCCUCg -3'
miRNA:   3'- cuGGCGGCAGCAcUGGuGGCGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.