miRNA display CGI


Results 21 - 40 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 35122 0.75 0.18291
Target:  5'- aGCCGCCGgcggCGUcGcACC-CCGCCCCCg -3'
miRNA:   3'- cUGGCGGCa---GCA-C-UGGuGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 107827 0.75 0.18598
Target:  5'- cGGCCGCCGccgccucugcccggUCGccGCCGCCGCCCUCg -3'
miRNA:   3'- -CUGGCGGC--------------AGCacUGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 100095 0.75 0.186865
Target:  5'- cGCCGCCGcCGcuGCCGCCGCCCagcggcgCCCg -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGGG-------GGG- -5'
23803 5' -63.2 NC_005261.1 + 56290 0.74 0.196388
Target:  5'- cGCCGCUGuUCGccGCCACgGCCUCCCg -3'
miRNA:   3'- cUGGCGGC-AGCacUGGUGgCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 131562 0.74 0.20107
Target:  5'- -gUCGCCGUCGcc-CgGCUGCCCCCCg -3'
miRNA:   3'- cuGGCGGCAGCacuGgUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 12203 0.74 0.20107
Target:  5'- cGCCGCCGcCGguGCCGCCGCCgcugcugccgCCCCa -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGG----------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 117734 0.74 0.20107
Target:  5'- cGGCCGCgCGcUGgcGCCGCCGCCCCCa -3'
miRNA:   3'- -CUGGCG-GCaGCacUGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 99407 0.74 0.205848
Target:  5'- cGGCUGCCGcacgagCGUGAacgucaCGCUGCUCCCCg -3'
miRNA:   3'- -CUGGCGGCa-----GCACUg-----GUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 131420 0.74 0.210725
Target:  5'- cGCUGCCGgcagCGgcGCCGgCGCCCCCCu -3'
miRNA:   3'- cUGGCGGCa---GCacUGGUgGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 19982 0.74 0.210725
Target:  5'- cGACCGCCcuaUCGUccccGGCCGCgGCCCCUg -3'
miRNA:   3'- -CUGGCGGc--AGCA----CUGGUGgCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 69390 0.74 0.215701
Target:  5'- uGACCGCCGUCcUGAgCC-UgGCCUCCCg -3'
miRNA:   3'- -CUGGCGGCAGcACU-GGuGgCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 104891 0.74 0.215701
Target:  5'- cGCCGCCG-CGUGcGCCcggaCGCCCUCCa -3'
miRNA:   3'- cUGGCGGCaGCAC-UGGug--GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 100065 0.74 0.215701
Target:  5'- cGCCGCCGccCGggGGCgCGCCGCgCCCCu -3'
miRNA:   3'- cUGGCGGCa-GCa-CUG-GUGGCGgGGGG- -5'
23803 5' -63.2 NC_005261.1 + 53354 0.74 0.220777
Target:  5'- -cCCGCCG-CGcuuucGGCCGCCGCCCCggCCg -3'
miRNA:   3'- cuGGCGGCaGCa----CUGGUGGCGGGG--GG- -5'
23803 5' -63.2 NC_005261.1 + 82493 0.74 0.220777
Target:  5'- cGCCGUCGUCGUcGGCU-CCaCCCCCCu -3'
miRNA:   3'- cUGGCGGCAGCA-CUGGuGGcGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 99862 0.74 0.220777
Target:  5'- cGGCCGCCG-CGc-GCCGCCGCCgCUCg -3'
miRNA:   3'- -CUGGCGGCaGCacUGGUGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 6868 0.74 0.225954
Target:  5'- cGCUcCCGUUuUGACCgcccACCGCCCCCCu -3'
miRNA:   3'- cUGGcGGCAGcACUGG----UGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 107441 0.73 0.231234
Target:  5'- aGCCGUCcaCGuUGGCCACCGCCCCg- -3'
miRNA:   3'- cUGGCGGcaGC-ACUGGUGGCGGGGgg -5'
23803 5' -63.2 NC_005261.1 + 47385 0.73 0.231234
Target:  5'- cACaaCCGUCGgGGCggCGCCGCCCCCCg -3'
miRNA:   3'- cUGgcGGCAGCaCUG--GUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 102695 0.73 0.231234
Target:  5'- cGCgGCCGUCGcuGCCGCCGUCUCCg -3'
miRNA:   3'- cUGgCGGCAGCacUGGUGGCGGGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.